View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5616-Insertion-7 (Length: 705)
Name: NF5616-Insertion-7
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616-Insertion-7 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 619; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 44 - 705
Target Start/End: Complemental strand, 31408405 - 31407741
Alignment:
| Q |
44 |
aggaacaaaccaaaagtaaaacaaattgaaattgtgaaatcttagacttatttttcttcaatttaacaacagatccaaagaaatggtctgttgaaaaaat |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31408405 |
aggaacaaaccaaaagtaaaacaaattgaaattgagaaatcttagacttatttttcttcaatttaacaacagatccaaagaaatgatctgttgaaaaaat |
31408306 |
T |
|
| Q |
144 |
tacaatatagtcgtagctatgcttaaacataacccccatagtataacatcagggttatgcaaaaattatctcaaacttattctaggaacagctgcactta |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31408305 |
tacaatatagtcgtagctatgcttaaacataacccccatagtataacatcagggttatgcaaaaattatctcaaacttattctaggaacagctgcactta |
31408206 |
T |
|
| Q |
244 |
cagcaaaaacctaaataacttaggagctgcataaatagaaaaattaaaataaacatagctacgacaattaagagcgccatattagggagcaatcactcaa |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
31408205 |
cagcaaaaacctaaataacttaggagctgcagaaatagaaaaattaaaataaacatagctacgataattaagagcaccatattagggagcaatcactcaa |
31408106 |
T |
|
| Q |
344 |
ctcattcacccattgctcaacatcattttctagtgaggtcatttcattttctaccaccatgacttggcttctattcttggctaatttgttaagtaggtca |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31408105 |
ctcattcacccattgctcaacatcattttctagtgaggccatttcattttctaccaccatgacttggcttctattcttggctaatttgttaagtaggtca |
31408006 |
T |
|
| Q |
444 |
accatgctcctcctcttcgatcctggtgacgatgactcacaactatcttccgatgaa---gaaggctctggtgattcccgtttcaaagccacctccctct |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31408005 |
accatgctcctcctcttcgatcctggtgacgatgactcacaactatcttccgatgaagaagaaggctctggtgattcccgtttcaaagccaccttcctct |
31407906 |
T |
|
| Q |
541 |
ttggctccgacatgtacacatcagagccaatgaggtggggaaaattaagcttggccttttggccacgcatcttgaaagcagctttatcgtaagcaaaacc |
640 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31407905 |
ttgactccgacatgtacacatcagagccaatgaggtggggaaaattaagcttggccttttggccacgcatcttgaaagcagctttatcgtaagcaaaacc |
31407806 |
T |
|
| Q |
641 |
tgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttgggtctctta |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31407805 |
tgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttgggtctctta |
31407741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 324 - 705
Target Start/End: Complemental strand, 31411305 - 31410918
Alignment:
| Q |
324 |
attagggagcaatcactcaactcattcacccattgctcaacatcattttctagtgaggt---catttcattttctaccaccatgacttggcttctattct |
420 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| |||||| | |||| | | ||||| |||| |||||| | |||||| |||||||| |
|
|
| T |
31411305 |
attagagagctatcactcaactcattcacccattgctcaaaatcattagcatgtgatgatgccgtttcaatttcaaccaccttagcttggcatctattct |
31411206 |
T |
|
| Q |
421 |
tggctaatttgttaagtaggtcaaccatgc---tcctcctcttcgatcctggtgacgatgactcacaactatcttccgatgaagaaggctctggtgattc |
517 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||| | | ||||||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
31411205 |
tggctagtttgttaagtaggtcaaccgtgcccctcctcctctttaaccttggtgacgatgactcacaactttcctccgatgaagaaggctccggtgattc |
31411106 |
T |
|
| Q |
518 |
ccgtttcaaagccacctccctctttggctccgacatgtacacatcagagccaatgaggtggggaaaattaagcttggccttttggccacgcatcttgaaa |
617 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
31411105 |
ccgtttcaaaaccacctccttctctggctctggtgtaaacacatcagagccaatgaggtggggaaaattaagcttggcctttcggccacgcatcttaaaa |
31411006 |
T |
|
| Q |
618 |
gcagctttatcgtaagcaaaacctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttgggtctctta |
705 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31411005 |
gcagctttgtcgtaagccaaagctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttggatctctta |
31410918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 332 - 705
Target Start/End: Complemental strand, 31415264 - 31414879
Alignment:
| Q |
332 |
gcaatcactcaactcattcacccattgctcaacatcattttctagtgaggtcatttcattttctaccaccatg---acttggcttctattcttggctaat |
428 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| ||||||| || |||||| | ||||| | |||||| || |||||||||||||||||||||||| |
|
|
| T |
31415264 |
gcaatcattcaactcattcacccactgctcaaaatcatttgcttgtgaggccttttcaacgccaaccaccgtggctacttggcttctattcttggctaat |
31415165 |
T |
|
| Q |
429 |
ttgttaagtaggtcaaccatgc---tcctcctcttcgatcctggtgacgatgactcacaactatcttccgatgaagaag------gctctggtgattccc |
519 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||| | ||||||||||||| |||| |||||||||| |
|
|
| T |
31415164 |
ttgttaagtaggtcaaccatgcccctcctcctcttcaaccctggtgacactgactcacaacttccctccgatgaagaagaagaaggctcgggtgattccc |
31415065 |
T |
|
| Q |
520 |
gtttcaaagccacctccctctttggctccgacatgtacacatcagagccaatgaggtggggaaaattaagcttggccttttggccacgcatcttgaaagc |
619 |
Q |
| |
|
||||||| |||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
31415064 |
ttttcaaaaccacctccctctctggctcagatgtagacacatcagagccaatgaggtggggaaaattaagcttggcctttcggcctcgcatcttaaaagc |
31414965 |
T |
|
| Q |
620 |
agctttatcgtaagcaaaacctgcttcctcctcagtcacataagtaccaagccaaaccctagcaccattcttttttgggtctctta |
705 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
31414964 |
agctttgtcgtaagccaaagctgcttcctcctcagtcacatacgttccaagccaaactctagcaccattcttttttggatctctta |
31414879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 31411573 - 31411446
Alignment:
| Q |
54 |
caaaagtaaaacaaattgaaattgtgaaatcttagacttatttttcttcaatttaacaacagatccaaagaaa----tggtctgttg----aaaaaatta |
145 |
Q |
| |
|
|||| |||||| || || |||||||| || ||||||| || ||||| |||||||||||| | ||||||||||| || ||||||| |||||| || |
|
|
| T |
31411573 |
caaatgtaaaataagtttaaattgtgcaaacttagacatagttttcatcaatttaacaataaatccaaagaaatgagtgctctgttggaaaaaaaaaata |
31411474 |
T |
|
| Q |
146 |
caatatagtcgtagctatgcttaaacat |
173 |
Q |
| |
|
||||| |||||||||| ||||||||||| |
|
|
| T |
31411473 |
caataaagtcgtagctttgcttaaacat |
31411446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 563 - 697
Target Start/End: Complemental strand, 1008742 - 1008608
Alignment:
| Q |
563 |
agagccaatgaggtggggaaaattaagcttggccttttggccacgcatcttgaaagcagctttatcgtaagcaaaacctgcttcctcctcagtcacataa |
662 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||| ||||| |||||||||| ||| |||| ||||| ||||| ||||| || ||||| | || |
|
|
| T |
1008742 |
agagccgataaggtggggaaaattgagcttggcttttctaccacggatcttgaaagtggctctatcataagccaaaccagcttcttcttcagtttcgtac |
1008643 |
T |
|
| Q |
663 |
gtaccaagccaaaccctagcaccattcttttttgg |
697 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
1008642 |
gttccaagccaaactctagctccattcttctttgg |
1008608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University