View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_high_10 (Length: 415)
Name: NF5616_high_10
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 13808255 - 13807859
Alignment:
| Q |
1 |
ttgcaaaagtctcaaattgttcatcttcttgaaagaatcagcattgaagctaacattttcggtgctttgggacttcaaaaccaatccttccacaaatttt |
100 |
Q |
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| T |
13808255 |
ttgcaaaagtctcaaattgttcatcttcttgaaagaatcagcattgaagctaacattttcggtgctttgggacttcaaaaccaatccttccacaaatttt |
13808156 |
T |
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| Q |
101 |
gttccctacatgtaaagaaaagatcgagattagaaggggaaaccccttttatgtttgcttgttagaaaatgatacaaaatgctgcaaaggagcatctcaa |
200 |
Q |
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| T |
13808155 |
gttccctacatgtaaagaaaagatcgagattagaaggggaaaccccttttatgtttgcttgttagaaaatgatacaaaatgctgcaaaggagcatctcaa |
13808056 |
T |
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| Q |
201 |
acgtacttgtaatgaacaaatgaacacgacaatgcaaacacactcagatcatgtgtccaacaatttgcagccaatatattaataagagtgatataattac |
300 |
Q |
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| T |
13808055 |
acgtacttgtaatgaacaaatgaacatgacaatgcaaacacactcagatcatgtgtccaacaatttacagccaatatattaataagagtgatataattac |
13807956 |
T |
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| Q |
301 |
aaataaacaaagaatcttgaaaaggtgatggaggaagatcagaagtttcattcaaatttgatgtagagaaagttcttacactattttgattcaaaac |
397 |
Q |
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| T |
13807955 |
aaataaacaaagaatcttgaaaaggtgatggaggaagatcagaagtttcattcaaatttgaagtagagaaagttcttacacaattttgattcaaaac |
13807859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 3268116 - 3268205
Alignment:
| Q |
188 |
aggagcatctcaaacgtacttgtaatgaacaaatgaacacgacaatgcaaacacactcagatcatgtgtccaacaatttgcagccaatat |
277 |
Q |
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| T |
3268116 |
aggagcatcccaaacgtgattgtaatgagcaattgaacatgacaatgcaaacacactcatatcacgcatccaacaatttgcagctaatat |
3268205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 3267921 - 3268057
Alignment:
| Q |
5 |
aaaagtctcaaattgttcatcttcttgaaagaatcagcattgaagctaacattttcggtgctttgggacttcaaaaccaatccttccacaaattttgttc |
104 |
Q |
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|||||||||||||| ||||||| |||||| | || || | || || ||||| | |||| |||| ||| |||||||||||||||||||| || ||||| |
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| T |
3267921 |
aaaagtctcaaattcttcatctccttgaaggtattagtctcgatgcaaacatcgttggtgttttgcgacatcaaaaccaatccttccacagtttctgttc |
3268020 |
T |
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| Q |
105 |
cctacatgtaaagaaaagatcgagattagaaggggaa |
141 |
Q |
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| T |
3268021 |
catgtatgtgaagaaaaaatagagattggaaggggaa |
3268057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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