View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5616_high_12 (Length: 402)
Name: NF5616_high_12
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 56277397 - 56277787
Alignment:
| Q |
1 |
caactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacattcctgtcc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56277397 |
caactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacattcctgtgg |
56277496 |
T |
|
| Q |
101 |
aacccaaaaac---gctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtgcttttgtcatcttgtaaaggaattctttg |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||||| |||| |
|
|
| T |
56277497 |
aacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgttgttttggcttcctgtaaaggaattgtttg |
56277596 |
T |
|
| Q |
198 |
ctgccgtacctgttttccttccccaaatccaaccatctatctctgtaatccttcaaacaaagactggattcaattcaactgccctcctcaatgtcacatt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
56277597 |
ctgccgtacctgttttccttccccaaatccaaccatctatctctgcaatccttcaaacaaagactttattcaattcaactgccctcctcaatgtgacata |
56277696 |
T |
|
| Q |
298 |
actgatagcatagctcttgc------------ttttgattttgacccttccaaattcaaattcaaattggtaagggtgaaacgcattcagaagtatc |
382 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56277697 |
actgatagcatagctcttgcttttgattttgattttgattttgacccttc------caaattcaaattggtaagggtgaaacgcattcagaagtatc |
56277787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University