View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_high_13 (Length: 394)
Name: NF5616_high_13
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 28592613 - 28592978
Alignment:
| Q |
19 |
agtttctaccgtcgtttaatattgaatctccgttgaggaacttgtagggcacataaggtgggttctcccctatcatacacttgaaaaatataattaatat |
118 |
Q |
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| T |
28592613 |
agtttctaccgtcgtttaatattgaatctccgttggggaacttgcagggcacataaggtgggttctcccctctcatacacttgaaaaatataattaatat |
28592712 |
T |
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| Q |
119 |
cacttaaaaattaaattgacaattgagaggataaatagaaaagttgttgtagagcaaaagggggaagtaatttaagaataacatttaaactagacataag |
218 |
Q |
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| T |
28592713 |
cacttaaaaattaaattgacaattgagag-ataaatagaaaagttgttgtagagcaaaagggggaagtaatttaagaataacatttaaactagaaataag |
28592811 |
T |
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| Q |
219 |
aaatgtaaaaacaatcaaccaatgacaaacaaaataaattcacagtctcatcacattcaacaaactagattcaattcatacaaactagtaatacaaacca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28592812 |
aaatgtaaaaacaatcaaccaatgacaaacaaaataaattcacagtctcatcacattcaacaaactagattcaattcatacaaactagtaatacaaacta |
28592911 |
T |
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| Q |
319 |
gagaaacaactttgttcttccattccttcaaaaaactttgttcttgcctgttttctgctagtataat |
385 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28592912 |
gagaaacaaatttgttcttgcattccttcaaaaaactttgttcttgcctgttttctgctagtataat |
28592978 |
T |
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