View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_high_2 (Length: 660)
Name: NF5616_high_2
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 22769878 - 22769521
Alignment:
| Q |
1 |
cagaaaataagagaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatannnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22769878 |
cagaaaataagagaataagaaaaggaaatagaatactaagtaggaagccatgaaaaaatgacagattaattaaggagagaaatatgaatgaatatatttt |
22769779 |
T |
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| Q |
101 |
nnnggtggtgtaaatatgtgagtatgaatgtataacagagttctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttgga |
200 |
Q |
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| T |
22769778 |
tttggtggtgta--------------------taacagaattctctagtgacgtttgccattagctgtgttgattactacagtagttgacttgacttgga |
22769699 |
T |
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| Q |
201 |
aaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattgagaattttattggagcccttaatggactttacactaatagtccatttcat |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22769698 |
aaattcacttaaa---aagacttgagaaattggccacaaagagtgtattgagaattttattggagcccttatgtgactttacactaatagtccatttcat |
22769602 |
T |
|
| Q |
301 |
ggagccacaagtttacatcgcagagtccaccacaaattgacaaggtagaattttgtgcacacaattaaatgcagcttatat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |
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| T |
22769601 |
ggagccacaagtttacatcgcagagtccaccacaaattgataaggtacaattttgtgcacacaattaaacgcagcttatat |
22769521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 597
Target Start/End: Original strand, 1914116 - 1914164
Alignment:
| Q |
549 |
attcgaaatagtttctccacaacaaatgaactcgacgagcaatctagaa |
597 |
Q |
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| T |
1914116 |
attcgaaatagtttctccacaacaaatgaactggacgagcaatttagaa |
1914164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 599
Target Start/End: Original strand, 30312187 - 30312236
Alignment:
| Q |
550 |
ttcgaaatagtttctccacaacaaatgaactcgacgagcaatctagaata |
599 |
Q |
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||||||||| |||||| || |||||||||||||||||||||| ||||||| |
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| T |
30312187 |
ttcgaaatattttctcaacgacaaatgaactcgacgagcaatttagaata |
30312236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 15528698 - 15528632
Alignment:
| Q |
182 |
gtagttgacttgacttggaaaattcacttaaaaagaagacttgagaaattggccacaaagagtgtattg |
250 |
Q |
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| T |
15528698 |
gtagttgacttgacttcgacaattcacttaga--gaagacttaagaaattggccagaaagagtgtattg |
15528632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 15528589 - 15528529
Alignment:
| Q |
275 |
gactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
335 |
Q |
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| T |
15528589 |
gactttacactaattgtccatttcatggaacccaaagtttacattgtagagtccatcacaa |
15528529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 30638855 - 30638909
Alignment:
| Q |
541 |
atttgttcattcgaaatagtttctccacaacaaatgaactcgacgagcaatctag |
595 |
Q |
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||||||| ||| ||||||||||| |||||||||| |||||| |||||||||||| |
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| T |
30638855 |
atttgttgatttaaaatagtttcttcacaacaaataaactcggcgagcaatctag |
30638909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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