View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5616_high_3 (Length: 586)

Name: NF5616_high_3
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5616_high_3
NF5616_high_3
[»] chr3 (14 HSPs)
chr3 (9-417)||(37727618-37728026)
chr3 (8-417)||(33240185-33240594)
chr3 (371-417)||(48058264-48058310)
chr3 (362-417)||(45081476-45081532)
chr3 (363-417)||(17604048-17604102)
chr3 (371-417)||(31595124-31595170)
chr3 (371-417)||(31595873-31595919)
chr3 (371-417)||(54516951-54516997)
chr3 (371-417)||(54524701-54524747)
chr3 (362-426)||(25081550-25081615)
chr3 (362-417)||(1093160-1093216)
chr3 (362-417)||(18387634-18387690)
chr3 (363-410)||(45082206-45082254)
chr3 (362-417)||(46915783-46915839)
[»] chr1 (17 HSPs)
chr1 (408-570)||(32716673-32716835)
chr1 (363-417)||(10919383-10919437)
chr1 (371-417)||(2070776-2070822)
chr1 (371-417)||(2071485-2071531)
chr1 (363-417)||(23817588-23817642)
chr1 (364-417)||(13505307-13505360)
chr1 (364-417)||(19139620-19139673)
chr1 (371-417)||(4433916-4433962)
chr1 (367-417)||(13649357-13649407)
chr1 (371-417)||(19790829-19790875)
chr1 (371-417)||(25665711-25665757)
chr1 (371-417)||(25670658-25670704)
chr1 (371-417)||(50546071-50546117)
chr1 (364-411)||(4929803-4929851)
chr1 (365-417)||(22914697-22914749)
chr1 (362-417)||(36682270-36682326)
chr1 (362-417)||(51097502-51097558)
[»] chr5 (10 HSPs)
chr5 (363-407)||(17105364-17105408)
chr5 (371-417)||(33574039-33574085)
chr5 (371-417)||(35424255-35424301)
chr5 (352-417)||(18861880-18861945)
chr5 (363-417)||(12255123-12255177)
chr5 (364-417)||(24872617-24872670)
chr5 (364-417)||(25746785-25746838)
chr5 (362-417)||(17277760-17277816)
chr5 (362-417)||(22778234-22778290)
chr5 (362-417)||(27365638-27365694)
[»] chr4 (10 HSPs)
chr4 (363-417)||(56295223-56295278)
chr4 (363-417)||(1865487-1865541)
chr4 (356-417)||(6050753-6050814)
chr4 (364-417)||(11380268-11380321)
chr4 (363-417)||(55000629-55000684)
chr4 (371-417)||(17736570-17736616)
chr4 (384-417)||(6049813-6049846)
chr4 (356-417)||(50182445-50182506)
chr4 (364-417)||(50303374-50303427)
chr4 (389-417)||(56028651-56028679)
[»] chr2 (5 HSPs)
chr2 (363-417)||(13913465-13913520)
chr2 (357-417)||(44356802-44356863)
chr2 (364-417)||(3322899-3322953)
chr2 (371-417)||(12332056-12332102)
chr2 (357-417)||(44357593-44357654)
[»] scaffold1370 (2 HSPs)
scaffold1370 (363-417)||(918-972)
scaffold1370 (362-417)||(191-247)
[»] chr8 (5 HSPs)
chr8 (371-417)||(16723672-16723718)
chr8 (363-417)||(36228494-36228549)
chr8 (371-413)||(28540380-28540422)
chr8 (384-417)||(20105101-20105134)
chr8 (362-398)||(36698631-36698668)
[»] chr7 (3 HSPs)
chr7 (371-417)||(19068454-19068500)
chr7 (357-416)||(41115489-41115549)
chr7 (387-417)||(3772585-3772615)
[»] scaffold0006 (1 HSPs)
scaffold0006 (364-417)||(138542-138595)
[»] chr6 (10 HSPs)
chr6 (357-417)||(22046415-22046476)
chr6 (357-417)||(22058823-22058884)
chr6 (352-417)||(29344638-29344703)
chr6 (381-417)||(32260137-32260173)
chr6 (371-417)||(15997548-15997594)
chr6 (362-417)||(30321294-30321350)
chr6 (357-417)||(1859791-1859852)
chr6 (362-417)||(18970658-18970715)
chr6 (357-417)||(22047206-22047267)
chr6 (364-400)||(7588197-7588233)
[»] scaffold0285 (1 HSPs)
scaffold0285 (362-417)||(17542-17598)
[»] scaffold0085 (1 HSPs)
scaffold0085 (362-417)||(14946-15002)
[»] scaffold0086 (1 HSPs)
scaffold0086 (360-416)||(8441-8498)
[»] scaffold0025 (1 HSPs)
scaffold0025 (362-398)||(150593-150629)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 417
Target Start/End: Complemental strand, 37728026 - 37727618
Alignment:
Q  9 ataagaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37728026 ataagaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagatt 37727927  T
Q  109 ttgattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacgggatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37727926 ttgattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacaggatg 37727827  T
Q  209 agattaaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagacgacgaacgaccagcaagtgccttttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||    
T  37727826 agattaaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagaagatgaaagaccagcatgtgccttttt 37727727  T
Q  309 taatatatagaccgctgatattactcacaatcaatcaactggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctct 408  Q
    ||||||||| |||| |||||||| |   | |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  37727726 taatatataaaccgttgatattaattcaattcaatccaatggctagcatttaatcctctcatctctcattttaagagtcctctcatttgatatgccctat 37727627  T
Q  409 atatatata 417  Q
    |||||||||    
T  37727626 atatatata 37727618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 33240594 - 33240185
Alignment:
Q  8 gataagaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33240594 gataagaatggaaggtcacatgagcaatagaggttatgacggtgcatcaacctttcgaattcctttgaaccaacaatggagacatggaggaaagtaagat 33240495  T
Q  108 tttgattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacgggat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33240494 tttgattatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacaagat 33240395  T
Q  208 gagattaaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagacgacgaacgaccagcaagtgcctttt 307  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  33240394 gagattaaaacatggaacaatttctagaaaaat-gaacaaacaagagaaacccaagcgtgcagctagttagagaagacgaaagaccagcatgtgcctttt 33240296  T
Q  308 ttaatatatagaccgctgatattactcacaatcaatcaactggctagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctc 407  Q
    |||||||||| |||| |||||||| ||  | |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33240295 ttaatatataaaccgttgatattaatccaattcaatccaatggccagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctc 33240196  T
Q  408 -tatatatata 417  Q
     ||||||||||    
T  33240195 atatatatata 33240185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 48058310 - 48058264
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  48058310 ctctcattttaaaagtcctctcacttgatatgccctatatatatata 48058264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 45081532 - 45081476
Alignment:
Q  362 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||||| || | |||||| |||||||||||| ||||||||||    
T  45081532 tcctctcatctctcattttaaaaggtgctctcacttgatatgccctatatatatata 45081476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 17604102 - 17604048
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||| | ||| |||||||||||||||||  |||| ||||||||||    
T  17604102 cctctcatctctcactataaaagtcctctcatttgatacaccctatatatatata 17604048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 31595170 - 31595124
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||| || | |||||||| |||||||||||||||||||||||    
T  31595170 ctctcatttaaaaactcctctcacttgatatgccctctatatatata 31595124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 31595873 - 31595919
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||| || | |||||||| |||||||||||||||||||||||    
T  31595873 ctctcatttaaaaactcctctcacttgatatgccctctatatatata 31595919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 54516997 - 54516951
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||| || | ||||||||||||| ||||||||||||||||||    
T  54516997 ctctcatttaaaaactcctctcatttgaaatgccctctatatatata 54516951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 54524701 - 54524747
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  54524701 ctctcattttaaaagtcctctcatttgaaatgtcctatatatatata 54524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 25081550 - 25081615
Alignment:
Q  362 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatatacacacacac 426  Q
    ||||||||||||||| | ||| |  |||||||| |||||||||||| |||||||||| ||||||||    
T  25081550 tcctctcatctctcactataacaactcctctcacttgatatgccctatatatatatatacacacac 25081615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 1093216 - 1093160
Alignment:
Q  362 tcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||| |||  | |||||||| |||||||||||| ||||||||||    
T  1093216 tcctctcatctctcattgtaactactcctctcacttgatatgccctatatatatata 1093160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 18387690 - 18387634
Alignment:
Q  362 tcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 417  Q
    |||||| |||||||||| |||  | ||||||||||||||||||||| ||||||||||    
T  18387690 tcctcttatctctcattgtaactactcctctcatttgatatgccctatatatatata 18387634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 45082206 - 45082254
Alignment:
Q  363 cctctcatctctcattttaagag-tcctctcatttgatatgccctctat 410  Q
    |||||||||||||||||||| || |||||||| |||||||| |||||||    
T  45082206 cctctcatctctcattttaaaagatcctctcacttgatatgtcctctat 45082254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 46915839 - 46915783
Alignment:
Q  362 tcctctcatctctcattttaa-gagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||||  | |||||||| |||||||||| | ||||||||||    
T  46915839 tcctctcatctctcattttaacaactcctctcacttgatatgccatatatatatata 46915783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 8e-75; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 408 - 570
Target Start/End: Original strand, 32716673 - 32716835
Alignment:
Q  408 tatatatatacacacacactattgagttttcctgataacctagtttgctcttatatattgttcataaccttttgaaaccgataattatcgctcttcacac 507  Q
    |||||||||| | | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32716673 tatatatatatatatacactattgagtctttctgataacctagtttgctcttatatattgttcataaccttttgaaaccgataattatcgctcttcacac 32716772  T
Q  508 aaatagaaagagagaaagaaaccctatctaggttgttctccgcgtcgttgaatttgaagagag 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32716773 aaatagaaagagagaaagaaaccctatctaggttgttctccgcgtcgttgaatttgaagagag 32716835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 10919437 - 10919383
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| ||| |||||||||||||  |||||||||||||||    
T  10919437 cctctcatctctcattttaatagtgctctcatttgatacaccctctatatatata 10919383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 2070822 - 2070776
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  2070822 ctctcattttaaaagtcttctcacttgatatgccctctatatatata 2070776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 2071485 - 2071531
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  2071485 ctctcattttaaaagtcctctcacttgatatgccctatatatatata 2071531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 23817642 - 23817588
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| ||||||||||    
T  23817642 cctctcatctctcattttaatagtgctctcatttgatacaccctatatatatata 23817588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 13505360 - 13505307
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  13505360 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatata 13505307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 19139620 - 19139673
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  19139620 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatata 19139673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 4433962 - 4433916
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  4433962 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 4433916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 13649407 - 13649357
Alignment:
Q  367 tcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  13649407 tcatctctcattttaacactcctctcatttgatacaccctatatatatata 13649357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 19790875 - 19790829
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| | |||||||| |||||||||||| ||||||||||    
T  19790875 ctctcattttaaaactcctctcacttgatatgccctatatatatata 19790829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 25665757 - 25665711
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  25665757 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 25665711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 25670658 - 25670704
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  25670658 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 25670704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 50546071 - 50546117
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||||    
T  50546071 ctctcattttaaaagtcctcttacttgatatgccctatatatatata 50546117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 4929851 - 4929803
Alignment:
Q  364 ctctcatctctcattttaaga-gtcctctcatttgatatgccctctata 411  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||||||||    
T  4929851 ctctcatctctcattataagatgtcctctcacttgatatgtcctctata 4929803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 22914697 - 22914749
Alignment:
Q  365 tctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||| | |||||||| ||||||  |||| ||||||||||    
T  22914697 tctcatctctcattttaaaactcctctcacttgatacaccctatatatatata 22914749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 36682270 - 36682326
Alignment:
Q  362 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||| | ||| |  ||||||||||||||||||||| ||||||||||    
T  36682270 tcctctcatctctcactataacaactcctctcatttgatatgccctatatatatata 36682326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 51097558 - 51097502
Alignment:
Q  362 tcctctcatctctcattttaag-agtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||| |||  | |||||||| |||||||| ||||||||||||||    
T  51097558 tcctctcatctctcattataactactcctctcacttgatatgtcctctatatatata 51097502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 17105408 - 17105364
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctc 407  Q
    |||||||||| |||||||||||||||||||||||||||| |||||    
T  17105408 cctctcatctttcattttaagagtcctctcatttgatattccctc 17105364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 33574039 - 33574085
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  33574039 ctctcattttaaaagtcctctcacttgatatgccctatatatatata 33574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 35424301 - 35424255
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||    
T  35424301 ctctcattttaaaagtcctctcatttgaaatgccctcaatatatata 35424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 18861945 - 18861880
Alignment:
Q  352 tagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||  ||||||| |||||||||||| |||||||||| |||| ||||| | ||||||||||    
T  18861945 tagcatttaaccctctcacctctcattttaaaagtcctctcacttgaaatgccatatatatatata 18861880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 12255177 - 12255123
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||| | ||| |||||||||||||||||  |||| ||||||||||    
T  12255177 cctctcatctctcactataaaagtcctctcatttgatacaccctatatatatata 12255123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 24872617 - 24872670
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||| |||||||| |||  ||||||||||||||||  |||||||||||||||    
T  24872617 ctctcacctctcattataaatgtcctctcatttgatacaccctctatatatata 24872670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 25746785 - 25746838
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| | |||||||||||||||   || |||||||||||    
T  25746785 ctctcatctctcattttaaaactcctctcatttgatacatcccctatatatata 25746838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 17277760 - 17277816
Alignment:
Q  362 tcctctcat-ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||| |||||||| ||| | |||||||||||||||  |||||||||||||||    
T  17277760 tcctctcattctctcattataacactcctctcatttgatacaccctctatatatata 17277816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 22778290 - 22778234
Alignment:
Q  362 tcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||| ||||| ||||||||| |||||||| | | ||||||||||    
T  22778290 tcctctcatctctcattataagatgtcctctcacttgatatgacatatatatatata 22778234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 27365638 - 27365694
Alignment:
Q  362 tcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||| ||| | ||||||||| ||||||  |||||||||||||||    
T  27365638 tcctctcatctctcattataaaatgtcctctcacttgatacaccctctatatatata 27365694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 56295278 - 56295223
Alignment:
Q  363 cctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| || |||||||| |||||||||||| ||||||||||    
T  56295278 cctctcatctctcattttaaaaggtcctctcacttgatatgccctatatatatata 56295223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 1865541 - 1865487
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| ||||||||||    
T  1865541 cctctcatctctcattttaacagtgctctcatttgatacaccctatatatatata 1865487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 6050753 - 6050814
Alignment:
Q  356 atttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| |   ||| | ||||||||||||||||| ||||||||||||||    
T  6050753 atttagtcctctcatctcttaccataaaaatcctctcatttgatatgtcctctatatatata 6050814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 11380321 - 11380268
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||| ||||||||||    
T  11380321 ctctcatctctcattataaaagtcctctcacttgatatgtcctatatatatata 11380268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 55000629 - 55000684
Alignment:
Q  363 cctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| || |||| ||| |||||||||||| ||||||||||    
T  55000629 cctctcatctctcattttaaaaggtcctttcacttgatatgccctatatatatata 55000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 17736616 - 17736570
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| | ||||||||||||| ||| ||||||||||||||    
T  17736616 ctctcattttaaaactcctctcatttgaaatgtcctctatatatata 17736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 6049846 - 6049813
Alignment:
Q  384 agtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||| |||||||||||||||||||||||    
T  6049846 agtcctctcacttgatatgccctctatatatata 6049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 50182506 - 50182445
Alignment:
Q  356 atttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||| ||||||||||||||||||| | ||| |||||| |||||||| | | ||||||||||    
T  50182506 atttattcctctcatctctcattttgaaagtgctctcacttgatatgtcatatatatatata 50182445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 50303374 - 50303427
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| | |||||||||||||||   || |||||||||||    
T  50303374 ctctcatctctcattttaaaactcctctcatttgatacatcccctatatatata 50303427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 417
Target Start/End: Complemental strand, 56028679 - 56028651
Alignment:
Q  389 tctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||||||||||||    
T  56028679 tctcatttgatatgccctctatatatata 56028651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 13913465 - 13913520
Alignment:
Q  363 cctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||    
T  13913465 cctctcatctctcattataagatgtcctctcacttgatatgccctatatatatata 13913520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 44356863 - 44356802
Alignment:
Q  357 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||||    
T  44356863 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatata 44356802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 3322953 - 3322899
Alignment:
Q  364 ctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| | ||||||||| |||||||||| | ||||||||||    
T  3322953 ctctcatctctcattttaaaatgtcctctcacttgatatgccatatatatatata 3322899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 12332056 - 12332102
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| | |||||| |||||| ||||||||||||||||||    
T  12332056 ctctcattttaaaactcctcttatttgaaatgccctctatatatata 12332102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 44357593 - 44357654
Alignment:
Q  357 tttagtcctctcatctctcattttaa-gagtcctctcatttgatatgccctctatatatata 417  Q
    |||| |||||||||||||||||||||  | |||||||| |||||||| ||| ||||||||||    
T  44357593 tttattcctctcatctctcattttaacaattcctctcacttgatatgtcctatatatatata 44357654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 918 - 972
Alignment:
Q  363 cctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| | |||||||| ||||||  |||||||||||||||    
T  918 cctctcatctctcattttaaaattcctctcacttgatacaccctctatatatata 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 247 - 191
Alignment:
Q  362 tcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||    
T  247 tcctctcatcctctcatttaaaaagtcctctcatttgaaatgccctatatatatata 191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 16723718 - 16723672
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  16723718 ctctcattttaaaagtcctctcatttgaaatgccctatatatatata 16723672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 36228549 - 36228494
Alignment:
Q  363 cctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||| || |||||| | |||||||||||| ||||||||||    
T  36228549 cctctcatctctcattttaaaaggtcctcttacttgatatgccctatatatatata 36228494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 413
Target Start/End: Original strand, 28540380 - 28540422
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatata 413  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||    
T  28540380 ctctcattttaaaagtcctctcatttgaaatgccctatatata 28540422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 20105101 - 20105134
Alignment:
Q  384 agtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||| |||||||||||||||||||||||    
T  20105101 agtcctctcacttgatatgccctctatatatata 20105134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 36698631 - 36698668
Alignment:
Q  362 tcctctcatctctcattttaaga-gtcctctcatttga 398  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36698631 tcctctcatctctcattttaagacgtcctctcatttga 36698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 19068500 - 19068454
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||    
T  19068500 ctctcatttaaaaagtcctctcatttgaaatgccctctatatatata 19068454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 41115489 - 41115549
Alignment:
Q  357 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatat 416  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| |||||||||    
T  41115489 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatat 41115549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 417
Target Start/End: Complemental strand, 3772615 - 3772585
Alignment:
Q  387 cctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||||||||||||||    
T  3772615 cctctcatttgatatgccctctatatatata 3772585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 138595 - 138542
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||| | |||||||||||||||  |||| ||||||||||    
T  138595 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatata 138542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 22046476 - 22046415
Alignment:
Q  357 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||||    
T  22046476 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatata 22046415  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 22058884 - 22058823
Alignment:
Q  357 tttagtcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    |||| ||||||||||||||||||||| |  |||||||| |||||||||||| ||||||||||    
T  22058884 tttattcctctcatctctcattttaacaactcctctcacttgatatgccctatatatatata 22058823  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 29344638 - 29344703
Alignment:
Q  352 tagcatttagtcctctcatctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||  ||||||| |||||||||||| || ||| ||| |||| ||||||||||||||||||    
T  29344638 tagcatttaaccctctcacctctcattttaaaagccctttcacttgaaatgccctctatatatata 29344703  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 32260173 - 32260137
Alignment:
Q  381 aagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||||||| ||||||||||||||    
T  32260173 aagagtcctctcatttgatatggcctctatatatata 32260137  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 15997548 - 15997594
Alignment:
Q  371 ctctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    ||||||||| || | ||||||||||||| ||||||||||||||||||    
T  15997548 ctctcatttaaaaactcctctcatttgaaatgccctctatatatata 15997594  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 30321350 - 30321294
Alignment:
Q  362 tcctctcatctctcattttaag--agtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||||||||||| |||  | |||||||| |||||||||||||||||||||||    
T  30321350 tcctctcatctctcattt-aagttactcctctcacttgatatgccctctatatatata 30321294  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 1859791 - 1859852
Alignment:
Q  357 tttagtcctctcatctctcattttaaga-gtcctctcatttgatatgccctctatatatata 417  Q
    |||| ||||||||||||||||||||| | ||||||||| |||||||| |  |||||||||||    
T  1859791 tttattcctctcatctctcattttaaaatgtcctctcacttgatatgtctactatatatata 1859852  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 18970658 - 18970715
Alignment:
Q  362 tcctctcatc-tctcattttaagagtcctctcatttgatatgccctc-tatatatata 417  Q
    |||||||||| ||||||||||| |||||||| |||||| |||||||| ||||||||||    
T  18970658 tcctctcatcctctcattttaaaagtcctcttatttgaaatgccctcatatatatata 18970715  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 22047206 - 22047267
Alignment:
Q  357 tttagtcctctcatctctcattttaa-gagtcctctcatttgatatgccctctatatatata 417  Q
    |||| |||||||||||||||||||||  | |||||||| |||||||| ||| ||||||||||    
T  22047206 tttattcctctcatctctcattttaacaattcctctcacttgatatgtcctatatatatata 22047267  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 7588197 - 7588233
Alignment:
Q  364 ctctcatctctcattttaagagtcctctcatttgata 400  Q
    ||||||||||||||||||| | |||||||||||||||    
T  7588197 ctctcatctctcattttaaaactcctctcatttgata 7588233  T

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Target: scaffold0285 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 17542 - 17598
Alignment:
Q  362 tcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatatata 417  Q
    |||||||||| |||||||| || | ||||||||||||| ||||||||||||||||||    
T  17542 tcctctcatcctctcatttaaaaaatcctctcatttgaaatgccctctatatatata 17598  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 14946 - 15002
Alignment:
Q  362 tcctctcatctctcattttaagag-tcctctcatttgatatgccctctatatatata 417  Q
    ||||||||||||||||||||| || | |||||| |||||||||||| ||||||||||    
T  14946 tcctctcatctctcattttaaaaggtgctctcacttgatatgccctatatatatata 15002  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 8441 - 8498
Alignment:
Q  360 agtcctctcatc-tctcattttaagagtcctctcatttgatatgccctctatatatat 416  Q
    |||||||||||| |||||||| ||||||  ||||| |||| |||||||||||||||||    
T  8441 agtcctctcatcctctcatttaaagagtaatctcacttgaaatgccctctatatatat 8498  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 150629 - 150593
Alignment:
Q  362 tcctctcatctctcattttaagagtcctctcatttga 398  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  150629 tcctctcatctctcattttaaaagtcctctcacttga 150593  T

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