View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_high_4 (Length: 542)
Name: NF5616_high_4
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 15228241 - 15228765
Alignment:
| Q |
1 |
caagctcattactacatagatcacattaaataggaaacggttccattattcaaccacattatgtaacaatacatttattaaaatactagcttgtcattca |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15228241 |
caagctcattactaaatagatcacattaaataggaaacggttccattattcaaccacattatgtaacaatacatttattaaaatactagcttgtcattca |
15228340 |
T |
|
| Q |
101 |
actcattaaacttctatgcagcaagtgattgaacatactcatccacctcaatgaagttcttgactgcaaaatctttgacaatacttggatcaggaatatc |
200 |
Q |
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| T |
15228341 |
actcattaaacttctatgcagcaagtgattgaacatactcatccacctcaatgaagttcttgactgcaaaatttttgacaatacttggatcaggaatatc |
15228440 |
T |
|
| Q |
201 |
attactaactttaacatactcagcacaccatttcatctcacatccttctccaactggtattaaagctaggtgtcccttgaatgatttgtagtactggaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15228441 |
attactaactttaacatactcagcacaccatttcatctcacatccttctccaactggtattaaagctaggtgtcccttgaatgatttgtagtactggaga |
15228540 |
T |
|
| Q |
301 |
agatccccttcaattatacaataggttgctgtcctcttttcatcatcagcagcatcaatcttctccgtcgacgacttcgcaagttgtgatcctacaacat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15228541 |
agatccccttcaattatacaataggttgctgtcctcttttcatcatcagcagcatcaatcttctccgtcgacgactttgcaagttgtgatcctacaacat |
15228640 |
T |
|
| Q |
401 |
atgccaccaaattagataagtagatatcaaaatgtacaaagattttcaattggtcacgataaactagatcgatgcacgaatctcttgtcgaattagcgca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15228641 |
atgccaccaaattagataagtagatatcaaaatgtacaaagattttcaattggtcacgataaactagatcgatgcacgaatctcttgtcgaattagcgca |
15228740 |
T |
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| Q |
501 |
gtggcgactgtctagctttgtatgt |
525 |
Q |
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| T |
15228741 |
gtggcgactgtctagctttgtatgt |
15228765 |
T |
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