View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_high_8 (Length: 475)
Name: NF5616_high_8
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 470
Target Start/End: Original strand, 13079467 - 13079918
Alignment:
| Q |
19 |
ctttactcatcttttcttgcaaataacaatcatctttttcctttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctcatatttttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079467 |
ctttactcatcttttcttgcaaataacaatcatctttttcctttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctcatatttttc |
13079566 |
T |
|
| Q |
119 |
tccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079567 |
tccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatca |
13079666 |
T |
|
| Q |
219 |
gatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctctagttgtgtctccctcaaaaggctcatttggttcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13079667 |
aatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctctagtagtgtctccctcaaaaggctcatttggttcaa |
13079766 |
T |
|
| Q |
319 |
catttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttggccacaattctctccttgaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13079767 |
catttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttggccacaattctctccttgaa |
13079866 |
T |
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| Q |
419 |
ttcttcttcttgtgtcttttccatcgaactttcactttcaacctatgcttct |
470 |
Q |
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| T |
13079867 |
ttcttcttcttgtgtcttttccatcgaactttcactttcaaccaatgcttct |
13079918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 13075263 - 13075639
Alignment:
| Q |
19 |
ctttactcatcttttcttgcaaataacaatcatctttttcctttgttatgtttttcttgaaaccttcatctacttcattttgtatcttctcatatttttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13075263 |
ctttactcatcttttcttgcaaataacaatcatctttttcctttgttatgtttttcttgaaaccttcatctat---attttgtatcttctcatatttttc |
13075359 |
T |
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| Q |
119 |
tccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075360 |
tccattcactttcttcatagacattccaattgttgaatctttttccttggacaattcagtttcctccatctcttgaaacttatttggttttcttccatca |
13075459 |
T |
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| Q |
219 |
gatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctatctctagttgtgtctccctcaaaaggctcatttggttcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13075460 |
aatattccaatatcaacattctcttgaaacttttgatttataatttccttctcaattctgtctctagttgtgtctccctcaaaaggctcatttggttcaa |
13075559 |
T |
|
| Q |
319 |
catttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13075560 |
catttagctttgtaaatccctctcctttcaacttcactatagcatattcaattttattttcctcatcctcgactcttttg |
13075639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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