View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_high_9 (Length: 470)
Name: NF5616_high_9
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Complemental strand, 36943580 - 36943135
Alignment:
| Q |
10 |
ataatactccatacagatgatacttaaaaaatttagtgaatcaactcacttcaaccatgaaccaatagtgtctaaggattgattatttgaggattcaacc |
109 |
Q |
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| T |
36943580 |
ataacactccatacagatgatacttaaaaattttagtgaatcaactcacttcaaccatgaaccaatagtgtctaaggattgattatttgaggattcaacc |
36943481 |
T |
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| Q |
110 |
gcaattttgcagctccaacgatagaaagcagttaaattatgacccaaactcttattgatttggtgtttgattgaatttttaaagtaaattgtttcgtact |
209 |
Q |
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| T |
36943480 |
gcaattttgcagctccaacgatagaaagcagttaaattatgacccaaactcttattgatttggtgtttgattgaatttttaaagtaaattgtttcgtagg |
36943381 |
T |
|
| Q |
210 |
tgttgtgaattcgaatatttgttcaatacaaacaaggacaaaatagagcaaagaacaatgggaaccaaccaaagcaacatttaatcagaaacaaatctag |
309 |
Q |
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| T |
36943380 |
tgttgtgaattcgaatatttgttcaatacaaacaaggacaaaatagagcaaagaacaatgggaaccaaccaaagcaacatttaatcagaaacaaatctag |
36943281 |
T |
|
| Q |
310 |
caacttatgtgtatagcaaatccacgatcaatataaataataataaagataaacagaatagaagaacaaacactccaaaattatttcaatgacgtgacgt |
409 |
Q |
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| T |
36943280 |
caacttatgtgtatagcaaatccacgatcagtataaataataataaagataaagagaatagaagaacaaacactccaaaattatttcaatgacgtgacgt |
36943181 |
T |
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| Q |
410 |
gattatgaaccaataatttgacttgatggggaagcagggatggatt |
455 |
Q |
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| T |
36943180 |
gattatgaaccaataatttgacttgatggggaagcagggatggatt |
36943135 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 334
Target Start/End: Complemental strand, 42685297 - 42685269
Alignment:
| Q |
306 |
ctagcaacttatgtgtatagcaaatccac |
334 |
Q |
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| T |
42685297 |
ctagcaacttatgtgtatagcaaatccac |
42685269 |
T |
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