View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5616_low_1 (Length: 696)

Name: NF5616_low_1
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5616_low_1
NF5616_low_1
[»] chr8 (1 HSPs)
chr8 (1-678)||(3521236-3521913)


Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Original strand, 3521236 - 3521913
Alignment:
Q  1 taaccacacatttagcataaagaataaaggggcagaatcggaaaagaatcaacttttggtgggaaataaagtcgtaagtcattcccatttcaaaagttta 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521236 taaccacacatttagcataaggaataaaggggtagaatcggaaaagaatcaacttttggtgggaaataaagtcgtaagtcattcccatttcaaaagttta 3521335  T
Q  101 aaccacaaaaacgtagtgggcaggcaggcatgttccggcttcattccaaacccaaccgacgcacgcagtcacgcactcttattctcgattcttccgtagc 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3521336 aaccacaaaaacgtagtgggcaggcaggcatgttccagcttcattccaaacccaactgacgcacgcagtcacgcactcttattctcgattcttccgtagc 3521435  T
Q  201 aaatttcctacaaaaaccatttttcaaaaccctaaaattcttcaactcgttcatttcattcaattttttcgattgaaatatggaaggtaatggaatcgat 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521436 aaatttcctacaaaaaccaattttcaaaaccctaaaattcttcaactcgttcatttcattcaattttttcgattgaaatatggaaggtaatggaatcgat 3521535  T
Q  301 gatgtgaagattccgttgttacagtctacagaagaagataacgtttccgttaagacggttacctttcaaattagcgatattaagtgtgcttcctgtgtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521536 gatgtgaagattccgttgttacagtctacagaagaagataacgtttccgttaagacggttacctttcaaattagcgatattaagtgtgcttcctgtgtta 3521635  T
Q  401 attctattgaatctgcgcttaaggatgttaacggtgttcaaagtattgctgtttcggtaattgatggccgcgccgcggtcaaatttgttcctaaactaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3521636 attctattgaatctgcgcttaaggatgttaacggtgttcaaagtattgctgtttcggtaattgatggccgcgccgcggtcaaatttgttcctaaactcat 3521735  T
Q  501 aactgtaagcctcaaaatcatcattatttaattttattatatgaatttcatgatttattcactagtcatagaagtgattattttattgttaaaaaatcaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3521736 aactgtaagcctcaaaatcatcattatttaattttattatatgaatttcatgatttattcactagtcatagaagtgattattttattgttaaaaaatcaa 3521835  T
Q  601 gaaaaaagttgtaattattaggttctgaattgtgtttttaattaattatgggttannnnnnnaattgtaggcgaaaag 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  3521836 gaaaaaagttgtaattattaggttctgaattgtgtttttaattaattatgggttattttcttaattgtaggcgaaaag 3521913  T

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