View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_low_17 (Length: 350)
Name: NF5616_low_17
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 56378615 - 56378943
Alignment:
| Q |
12 |
acatcatcatgccattcaactacaacataccttctgaatctgatgaacaagaagaggcagcaggtagactacatatgcatc---------atcaacagca |
102 |
Q |
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| T |
56378615 |
acatcatcatgccattcaactacaacataccttctgaatctgatgaacaagaagaggcagcaggtagactacatatgcatcatcatcatcatcaacagca |
56378714 |
T |
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| Q |
103 |
gcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaa |
202 |
Q |
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| T |
56378715 |
gcagcagcaggaggtagtgatgaagaaaaggttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaa |
56378814 |
T |
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| Q |
203 |
tttcaaaagcaagaggaatctgtggtgcaacagttctgccaagagattggtgtgaaaagaagagtgctaaaagtttggatgcataacaataaacacaatc |
302 |
Q |
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| T |
56378815 |
tttcaaaagcaagaggaatctgtggtgcaacagttctgccaagagattggtgtgaaaagaagagtgctaaaagtttggatgcataacaataaacacaatc |
56378914 |
T |
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| Q |
303 |
tcgccaaaaaacaacttcaatatgaacat |
331 |
Q |
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| T |
56378915 |
tcgccaaaaaacaacttcaacatgaacat |
56378943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 34370977 - 34370893
Alignment:
| Q |
204 |
ttcaaaagcaagaggaatctgtggtgcaacagttctgccaagagattggtgtgaaaagaagagtgctaaaagtttggatgcataa |
288 |
Q |
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| T |
34370977 |
ttcagaagctagaggaatctgtggtgcagaagttttgtcaagagattggaatcaaaagaagaatcctcaaagtgtggatgcataa |
34370893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 2494418 - 2494351
Alignment:
| Q |
134 |
ttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaa |
201 |
Q |
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| T |
2494418 |
ttcaggacaaagtttacacaagatcagaaggataagatgctgaaatttgctgagaaagttgggtggaa |
2494351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 14021574 - 14021521
Alignment:
| Q |
137 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
190 |
Q |
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| T |
14021574 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
14021521 |
T |
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