View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5616_low_18 (Length: 335)

Name: NF5616_low_18
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5616_low_18
NF5616_low_18
[»] chr2 (20 HSPs)
chr2 (11-265)||(32310895-32311158)
chr2 (33-335)||(32813371-32813692)
chr2 (11-179)||(28222449-28222616)
chr2 (31-192)||(32792566-32792736)
chr2 (92-265)||(32799246-32799428)
chr2 (11-150)||(28213660-28213797)
chr2 (47-199)||(32563728-32563885)
chr2 (261-335)||(32310791-32310865)
chr2 (261-335)||(32786407-32786481)
chr2 (261-335)||(32799458-32799532)
chr2 (261-335)||(28213971-28214045)
chr2 (261-335)||(32306661-32306735)
chr2 (261-335)||(32563955-32564029)
chr2 (261-335)||(32792790-32792864)
chr2 (263-335)||(28222239-28222311)
chr2 (11-78)||(32790307-32790374)
chr2 (88-183)||(32785109-32785214)
chr2 (19-68)||(32799198-32799247)
chr2 (209-265)||(32306765-32306821)
chr2 (226-265)||(32563887-32563926)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 32311158 - 32310895
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32311158 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 32311059  T
Q  111 taccttggaatcaaagttttaataaagcataccataacac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacacgg 201  Q
    |||||||||||| ||||||||||||| |||| || |||||          ||||||||| |||||||||||||||||| ||||||||||||| ||| | |    
T  32311058 taccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 32310959  T
Q  202 tgccacaaaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    |||||  |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32310958 tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaat 32310895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 33 - 335
Target Start/End: Original strand, 32813371 - 32813692
Alignment:
Q  33 aatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagttttaa 132  Q
    ||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  133 taaagcataccataacac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacacggtgccacaaaaatctataaattc 223  Q
    |||| |||| || |||||          ||||||||| |||||||||||||||||| |||||||| |||||||||| || |||  |||||| ||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  224 tgtaacagttgtcactttacatggccaaaactaccct----------caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttac 313  Q
    ||||||| |||||| |||||||||||||||||  | |          ||||||| |||||| |||||||| ||||||||||| |||||||||||||||||    
T  32813571 tgtaacatttgtcattttacatggccaaaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttac 32813670  T
Q  314 gagatgggagcaattcagacga 335  Q
     ||| |||||||||||||||||    
T  32813671 aagacgggagcaattcagacga 32813692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 28222616 - 28222449
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    ||||||||||| ||||||||| | ||||||||||| |||| ||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  28222616 cacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaa 28222517  T
Q  111 taccttggaatcaaagttttaataaagcataccataacaccttatatttactgcagccttgcaacacta 179  Q
    |||||||||||| |||||||| ||| ||||| || |||| |||  ||||| ||||||||||||||||||    
T  28222516 taccttggaatccaagttttattaaggcataacagaaca-ctttgatttattgcagccttgcaacacta 28222449  T

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Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 32792566 - 32792736
Alignment:
Q  31 gcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagtttt 130  Q
    ||||| ||||||||| ||||||||| | ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  32792566 gcaatctcatatctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagtttt 32792665  T
Q  131 aataaagcataccataaca---------ccttatatttactgcagccttgcaacactatagtaaacatttt 192  Q
    ||||||||||| || ||||           ||||||||| |||||||||||||||||||||||||||||||    
T  32792666 aataaagcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatttt 32792736  T

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Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 265
Target Start/End: Original strand, 32799246 - 32799428
Alignment:
Q  92 atacaaaaatatacttcaataccttggaatcaaagttttaataaagcataccataacacctt---------atatttactgcagccttgcaacactatag 182  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||  | ||||| ||         ||||||| |||||||||||||||||| ||    
T  32799246 atacaaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagag 32799345  T
Q  183 taaacattttttaacacggtgccacaaaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    ||||||| |||||| || ||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  32799346 taaacatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaat 32799428  T

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Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 28213660 - 28213797
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    |||||||||||||||||||||||||||||||||   |||| ||| |  ||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  28213660 cacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatatacttcaa 28213757  T
Q  111 taccttggaatcaaagttttaataaagcataccataacac 150  Q
    |||||||||||| |||||||| ||| ||||| || |||||    
T  28213758 taccttggaatccaagttttattaaggcataacagaacac 28213797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 32563728 - 32563885
Alignment:
Q  47 gaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagttttaataaagcataccata 146  Q
    ||||||||| | ||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  32563728 gaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacaga 32563827  T
Q  147 acac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacac 199  Q
    ||||          ||||||||| |||||||||||||||    |||||||||||||||||||    
T  32563828 acactttgatttgtttatatttattgcagccttgcaaca----agtaaacattttttaacac 32563885  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 32310865 - 32310791
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  32310865 caaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacga 32310791  T

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Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 32786407 - 32786481
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  32786407 caaatttgctaaaccagaatgaaatatatgaaccgactcacttaagagcttacaagatgggagcaattcagacga 32786481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 32799458 - 32799532
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  32799458 caaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacga 32799532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 28213971 - 28214045
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||    
T  28213971 caaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaattcagacga 28214045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 32306735 - 32306661
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||    
T  32306735 caaatttgctaaactagaatgaaatatatgaaccaactcacttaagagtttacaagacgggagcaattcagacga 32306661  T

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Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 32563955 - 32564029
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  32563955 caaattttctaaaccagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacga 32564029  T

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Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 32792790 - 32792864
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  32792790 caaatttgataaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacga 32792864  T

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Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 28222311 - 28222239
Alignment:
Q  263 aatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacga 335  Q
    |||||||||| | |||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||    
T  28222311 aatttgctaagccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaattcagacga 28222239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 32790307 - 32790374
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagtt 78  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |  |||||||||||| ||||||    
T  32790307 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 32790374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 32785109 - 32785214
Alignment:
Q  88 gcttatacaaaa-atatacttcaataccttggaatcaaagttttaataaagcataccataacacctt---------atatttactgcagccttgcaacac 177  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||| || ||||  ||         ||||||||||||||||||||||||    
T  32785109 gcttattcaaaagatatacttcaataccttggaatccaagttttaataaggcataacagaacattttcatttgttgatatttactgcagccttgcaacac 32785208  T
Q  178 tatagt 183  Q
    ||||||    
T  32785209 tatagt 32785214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 32799198 - 32799247
Alignment:
Q  19 cagttgtgacttgcaatatcatatctaggaatcatttctggatctctaat 68  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  32799198 cagttgtgacttgcaatatcatatctaagaatcattccttgatctctaat 32799247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 32306821 - 32306765
Alignment:
Q  209 aaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    |||||| ||||||||||||| || ||| |||||||||||||||||||||||| ||||    
T  32306821 aaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaat 32306765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 32563887 - 32563926
Alignment:
Q  226 taacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  32563887 taacagctgtcactttacatggccaaaactaccctcaaat 32563926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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