View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_low_20 (Length: 305)
Name: NF5616_low_20
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 37984120 - 37983829
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagcctattgcactataaataaatatatgccaagaaacaaaaaggacacc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37984120 |
tgggacacagaatgaacatgagaggatacatccatttcaggcgtggtttctagcctattgcactataaataaatatatgccaagaaacaaaaaggacgcc |
37984021 |
T |
|
| Q |
101 |
ataacataacatnnnnnnn---ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcact |
197 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37984020 |
agaacataacataaaaaaaaaattatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcact |
37983921 |
T |
|
| Q |
198 |
tatataaatataatggtaaaagaactttcattattcactaagaaaagaagtggaatataaagaaacacactgtcatcattccagtttcaaat |
289 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37983920 |
tatataaatataatggtaaaagaacttttattattcactaagataagaagtggaatataaagaaacacactgccatcattccagtttcaaat |
37983829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 31686914 - 31686626
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagcctattgcactataaataaatatatgccaagaaacaaaaaggacacc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31686914 |
tgggacacataatgaacatgagaggatacatccatttcaagcgtggttgctagcctattgcactataaataaatatatgccaagaaacaaaaaggacacc |
31686815 |
T |
|
| Q |
101 |
ataacataacatnnnnnnn--ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcactt |
198 |
Q |
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| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31686814 |
agaacataacataaaaaaaaattatatatgggcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcact- |
31686716 |
T |
|
| Q |
199 |
atataaatataatggtaaaagaactttcattattcactaagaaaagaagtggaatataaagaaacacactgtcatcattccagtttcaaat |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||| ||||||||| |
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| T |
31686715 |
-tataaatataatggtaaaagaactttcattattcactaagataagaagtgaaatataaaaaaacacactgccatcattccggtttcaaat |
31686626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 121 - 289
Target Start/End: Complemental strand, 17688757 - 17688591
Alignment:
| Q |
121 |
tatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcacttatataaatataatggtaaaaga |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
17688757 |
tatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagtttttaaacatatatgtcacttata--aatataatggtaaaaga |
17688660 |
T |
|
| Q |
221 |
actttcattattcactaagaaaagaagtggaatataaagaaacacactgtcatcattccagtttcaaat |
289 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17688659 |
actttcattattcactaagataagaagtggaatataaagaaacacactgtcatcattccagtttcaaat |
17688591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17688877 - 17688824
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagc |
54 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
17688877 |
tgggacatagaatgaacatgagaggatacatccatttcaggcgtggttgctagc |
17688824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 48848198 - 48848368
Alignment:
| Q |
69 |
ataaatatatgccaagaaacaaaaaggacaccataacataacatnnnnnnn--ttatatatgagcaaagtcttggtaattagaccattttaaattcatat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48848198 |
ataaatatatgccaagaaacaaaaaggacaccagaacataacataaaaaaaaattatatatgagcaaagtcttggtaattagaccattttaaattcatat |
48848297 |
T |
|
| Q |
167 |
ttagagtcagttttgaaacatatatgtcacttatataaatataatggtaaaagaactttcattattcactaag |
239 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48848298 |
ttagagtcagttttaaaacatatatgtcact--tataaatataatggtaaaagaactttcattattcactaag |
48848368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 1263784 - 1263615
Alignment:
| Q |
69 |
ataaatatatgccaagaaacaaaaaggacaccataacataacatnnnnnnn-ttatatatgagcaaagtcttggtaattagaccattttaaattcatatt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1263784 |
ataaatatatgccaagaaacaaaaaggacaccagaacataacataaaaaaaattatatatgagcaaagtcttggtaattagaccattttaaattcatatt |
1263685 |
T |
|
| Q |
168 |
tagagtcagttttgaaacatatatgtcacttatataaatataatggtaaaagaactttcattattcactaag |
239 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
1263684 |
tagagtcagttttaaaacatatatgtcact--tataaatataatggtaaaagaacttttattattcactaag |
1263615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1264079 - 1264003
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagcctattgcactataaataaatata |
77 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
1264079 |
tgggacacagaatgaacatgagaggttacatccatttcaggtgtggttgctagcctattgcactataaataaatata |
1264003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48847859 - 48847935
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagcctattgcactataaataaatata |
77 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
48847859 |
tgggacatagaatgaacatgagaggttacatccatttcaggcgtggttgctagcctattgcactataaataaatata |
48847935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 22000121 - 22000245
Alignment:
| Q |
163 |
atatttagagtcagttttgaaacatatatgtcacttatataaatataatggtaaaagaactttcattattcactaagaaaagaagtggaatataaagaaa |
262 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22000121 |
atatttataatcagttgtgaaacatatatgtcacttatata--tataatggtaaaagaactttcattattcactaagataagaagtggaatataaagaaa |
22000218 |
T |
|
| Q |
263 |
cacactgtcatcattccagtttcaaat |
289 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
22000219 |
cacactgccatcattccagtttcaaat |
22000245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22000009 - 22000120
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagcctattgcactataaataaatatatgccaagaaacaaaaaggacacc |
100 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
22000009 |
tgggacatagaatgaacatgataggatacatccatttcaggcgtggttgctagcctattgcactataaataaatatatgccaaaaaacaaaaagaacacc |
22000108 |
T |
|
| Q |
101 |
ataacataacat |
112 |
Q |
| |
|
| | |||||||| |
|
|
| T |
22000109 |
agagcataacat |
22000120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31892124 - 31892219
Alignment:
| Q |
1 |
tgggacacagaatgaacatgagaggatacatccatttcaaacgtggtttctagcctattgcactataaataaatatatgccaagaaacaaaaagga |
96 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31892124 |
tgggacacataatgaacatgagaggatacatccatttcaggcgtggttgctagcctattgcactgtaaataaatatatgccaagaaacaaaaagga |
31892219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 39074204 - 39074272
Alignment:
| Q |
121 |
tatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatat |
189 |
Q |
| |
|
||||||| | || ||||||||||| | || |||||||||||||||||| |||||||||| |||||||| |
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|
| T |
39074204 |
tatatataaacagagtcttggtaaatcaactattttaaattcatatttaaagtcagttttaaaacatat |
39074272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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