View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_low_24 (Length: 249)
Name: NF5616_low_24
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 36950484 - 36950250
Alignment:
| Q |
8 |
ctaacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcatttgttgtcatttacaacaaatggatggaggttggtttggata |
107 |
Q |
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| T |
36950484 |
ctaacatttatctttttctattgctttacatgcaatgtttgtatcttggtcatttcatttgttgtgatttacaacaaatggatggaggttggtttggatg |
36950385 |
T |
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| Q |
108 |
aagattggtttaaagggaggaaagtttggtttaaatcaattatgtgtacaagatgttcattacatacaacagcataaacaatcatcattaaacagataat |
207 |
Q |
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| T |
36950384 |
aagattggtttaaagggaggcaagtttggtttaaatcaattatgtgtacaagatgttcattacatacaacagcataaacaatcatcattaaacagataat |
36950285 |
T |
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| Q |
208 |
ctactctagatttgtcatttaattttttgatgatg |
242 |
Q |
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| T |
36950284 |
ctactctagatttgtcatttaattttttaatgatg |
36950250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 33292823 - 33292881
Alignment:
| Q |
9 |
taacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcattt |
67 |
Q |
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| T |
33292823 |
taacatttatcattttctattgttttacatgcaatggttgtatctaggtcatttcattt |
33292881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 13704354 - 13704299
Alignment:
| Q |
10 |
aacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcat |
65 |
Q |
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| T |
13704354 |
aacatttatcgttttatattggtttacatgcaatgtttatatctaggtcatttcat |
13704299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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