View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_low_27 (Length: 244)
Name: NF5616_low_27
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 56277409 - 56277231
Alignment:
| Q |
1 |
tgtttttgagttgatctttgatgaatgaacggcttgaaatgatgttgttccaccctctggaaatgcatttcatgctaagcaaaggcttggccggaacgcg |
100 |
Q |
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| T |
56277409 |
tgtttttgagttgatctttgatgaatgaacggcttgaaatgatgtggttccaacctctggaaatgcatttcatgctaagcaaaggtttggccggaacgcg |
56277310 |
T |
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| Q |
101 |
tgtgagaatatgagagattacgtctctgttcagagacccctcctcaatctcatcattctcaaccttaagcaacttcttc |
179 |
Q |
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|||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| | ||||||||||| | ||||||| |
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| T |
56277309 |
tgtgagaatatgagagatgacgtctctgttgagagaaccctcctcactctcatcactatcaaccttaagaatcttcttc |
56277231 |
T |
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