View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5616_low_5 (Length: 540)
Name: NF5616_low_5
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5616_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 21 - 523
Target Start/End: Original strand, 30916971 - 30917473
Alignment:
| Q |
21 |
ttgtctgcttgtttaacctcatgcaaagtcatcactccagactacggatgacgaccttgggcgcaactattacaaactggatcaagacccataatcttca |
120 |
Q |
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| T |
30916971 |
ttgtctgcttgtttaacctcatgcaaagtcatcactccagactacggatgacgacctagggcgcaactattacaaactggatcaagacccataatcttcg |
30917070 |
T |
|
| Q |
121 |
ttgtctaaggcctaatcacactgaagaacaaccttatactttcactactctgtaacgcctcaacgactagctctggatgcttaccattatgtaatgcctc |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30917071 |
ttgtgtaaggcctaatcacactgaagaacaaccttatactttcactactctgtaacgcctcaacgactagctctggatgcttaccattatgtaatgcctc |
30917170 |
T |
|
| Q |
221 |
gacaacaagtaacagttttcggagctgaatattgacaagcgtcatctaaaatagaccttccatcactccccgacggttctgtattgatgcttataaaatg |
320 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30917171 |
gacaacaagtaacagttttcggggctgaatattgacaagcgtcgtccaaaatagaccttccatcactccccgatggttctgtattgatgcttataaaata |
30917270 |
T |
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| Q |
321 |
cttacttccccactaatacaattgacataatttattcccacttaatacctctcatttttattttcatactgagtagagcgtcatagtacttgcaagtagc |
420 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
30917271 |
cttacttccccgctaatacaattgacataatttattcccacttaatacctctcatttttattttcatactaagttgagcgtcatagtacttgcaagtagc |
30917370 |
T |
|
| Q |
421 |
gccatgacatcaaatttcacgatagttattccatcacggccaactcactcattcatatacaatcagtatctaagcataatttttgaaatatatatgaaaa |
520 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30917371 |
gccatgacatcaaatttcacggtagttattccatcacggccaactcactcattcatatacaatcagtatctaagcataatttttgaaatatatatgaaaa |
30917470 |
T |
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| Q |
521 |
taa |
523 |
Q |
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||| |
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| T |
30917471 |
taa |
30917473 |
T |
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