View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5616_low_6 (Length: 538)

Name: NF5616_low_6
Description: NF5616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5616_low_6
NF5616_low_6
[»] chr1 (7 HSPs)
chr1 (17-322)||(26337869-26338173)
chr1 (441-538)||(26338314-26338411)
chr1 (441-538)||(26291000-26291098)
chr1 (27-77)||(40772239-40772289)
chr1 (325-369)||(26338198-26338242)
chr1 (324-369)||(26291170-26291215)
chr1 (251-322)||(26291239-26291312)
[»] chr5 (6 HSPs)
chr5 (22-88)||(36100346-36100412)
chr5 (27-88)||(5911248-5911309)
chr5 (27-88)||(5918196-5918257)
chr5 (27-88)||(6751170-6751231)
chr5 (27-80)||(36361891-36361945)
chr5 (27-88)||(35417414-35417475)
[»] chr3 (2 HSPs)
chr3 (27-88)||(10567457-10567518)
chr3 (27-88)||(10570707-10570768)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 26337869 - 26338173
Alignment:
Q  17 ataagtcactcactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatcgttatnnnnnnncaattattaaacgtga 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||    
T  26337869 ataagtcacacactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatcattataaaaaa-caattattaaacgtga 26337967  T
Q  117 ttaaatattgtcaatggtcttttatttcatattatttataagtcttatgtattttcagagataatttgaaggacatcgtgattaaatattgccaatgatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26337968 ttaaatattgtcaatggtcttttatttcatattatttataagtcttatgtattttcagagataatttgaaggacaccgtgattaaatattgccaatgatc 26338067  T
Q  217 aaagtattaatatgactaagcattgggaaatagatttcacacttcatataaatttccaaacttgttcaatttgaggtacttcttatcttgaattggatca 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  26338068 aaagtattaatatgactaagcattgggaaatagatttcccacttcatataaatttccaaacttgtacaatttgaggtatttcgtatcttgaattggatca 26338167  T
Q  317 gagcat 322  Q
    ||||||    
T  26338168 gagcat 26338173  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 441 - 538
Target Start/End: Original strand, 26338314 - 26338411
Alignment:
Q  441 gggatgaggtattttacaggatcattcagctatgtgttggctggatgttttatgtggaagggtattgttttgaggatttttcctgcatactgattcat 538  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26338314 gggatggggtattttacaagatcattcagctatgtgttggctggatgttttatgtggaagggtattgttttgaggatttttcctgcgtactgattcat 26338411  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 441 - 538
Target Start/End: Complemental strand, 26291098 - 26291000
Alignment:
Q  441 gggatgaggtattttac-aggatcattcagctatgtgttggctggatgttttatgtggaagggtattgttttgaggatttttcctgcatactgattcat 538  Q
    |||||| |||||||||| | |||||||||||||||| |||| ||| |||||||||||||||||| ||||| |||||||||||||||| ||||| |||||    
T  26291098 gggatggggtattttaccaagatcattcagctatgtattgggtggttgttttatgtggaagggtgttgttatgaggatttttcctgcgtactggttcat 26291000  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 40772289 - 40772239
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttca 77  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  40772289 cactacaatcaaataggaggtgttgactcatcataatggtcttttatttca 40772239  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 26338198 - 26338242
Alignment:
Q  325 ttgtggttgattgtgtctatgacttcaaaggctcgtagctcttaa 369  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  26338198 ttgtggttgattatgtctatgacttcaaaggctcgtagctcttaa 26338242  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 26291215 - 26291170
Alignment:
Q  324 tttgtggttgattgtgtctatgacttcaaaggctcgtagctcttaa 369  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||    
T  26291215 tttgtggttgattgtatctacgacttcaaaggctcgtagctcttaa 26291170  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 26291312 - 26291239
Alignment:
Q  251 tttcacacttcatataaatttccaaacttgttcaa--tttgaggtacttcttatcttgaattggatcagagcat 322  Q
    |||| |||||||||||||||||||||||| | |||  ||||||| ||||  ||||||||||||| ||| |||||    
T  26291312 tttcccacttcatataaatttccaaacttttacaatttttgaggcactttgtatcttgaattgggtcatagcat 26291239  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 36100346 - 36100412
Alignment:
Q  22 tcactcactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||| |||||| ||||||||| | ||||||||||||||| |||  |||||||||||||| |||||||    
T  36100346 tcacacactactatcaaatagaatgtgttgactcatcttaatgaccttttatttcatatggtcaatc 36100412  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5911248 - 5911309
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||||| ||||||||| | ||||||||||||||| |||  |||||||||||||| |||||||    
T  5911248 cactactatcaaatagaatgtgttgactcatcttaatgaccttttatttcatatggtcaatc 5911309  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5918196 - 5918257
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||||| ||||||||| | ||||||||||||||| |||  |||||||||||||| |||||||    
T  5918196 cactactatcaaatagaatgtgttgactcatcttaatgaccttttatttcatatggtcaatc 5918257  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 6751231 - 6751170
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||||| ||||||||| | ||||||||||||||| |||  |||||||||||||| |||||||    
T  6751231 cactactatcaaatagaatgtgttgactcatcttaatgaccttttatttcatatggtcaatc 6751170  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 36361891 - 36361945
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtctttta-tttcatat 80  Q
    |||||| ||||||||||| ||||||||||||||| ||| ||||||| ||||||||    
T  36361891 cactaccatcaaataggaagtgttgactcatcttaatgatcttttactttcatat 36361945  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 35417414 - 35417475
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||||| ||||||||| | ||||||||||||||| |||  | |||||||||||| |||||||    
T  35417414 cactactatcaaatagaatgtgttgactcatcttaatgaccatttatttcatatggtcaatc 35417475  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 10567518 - 10567457
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||||| ||||||||  | ||||||||||||||| |||  |||||||||||||| |||||||    
T  10567518 cactactatcaaataaaatgtgttgactcatcttaatgaccttttatttcatatggtcaatc 10567457  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 10570768 - 10570707
Alignment:
Q  27 cactacaatcaaataggaggtgttgactcatcttgatggtcttttatttcatatagtcaatc 88  Q
    |||||| ||||||||  | ||||||||||||||| |||  |||||||||||||| |||||||    
T  10570768 cactactatcaaataaaatgtgttgactcatcttaatgaccttttatttcatatggtcaatc 10570707  T

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