View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617-Insertion-2 (Length: 1116)
Name: NF5617-Insertion-2
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 1007; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1007; E-Value: 0
Query Start/End: Original strand, 7 - 1116
Target Start/End: Complemental strand, 44629339 - 44628221
Alignment:
| Q |
7 |
aggaatatccttcacatctatttgaactgaaaatgctttccaattcaaaacatcactaaagggtggaacatagctatcagaaatcaatacaggcacacat |
106 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629339 |
aggaatatccttcacatctatttgaactgaaaacgctttccaattcaaaacatcactaaagggtggaacatagctatcagaaatcaatacaggcacacat |
44629240 |
T |
|
| Q |
107 |
tctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttgctgcttctaagctttgtgtggtaagaatctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629239 |
tctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttgctgcttctaagctttgtgtggtaagaatctt |
44629140 |
T |
|
| Q |
207 |
catcagggagttcttcatagacttgcacatcttggtccttgtttttccatgtatcgaggagtagatatcgtatgtaaccatgcaagtgacctgcaaagaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629139 |
catcagggagttcttcatagacttgcacatcttggtctttgtttttccatgtatcgaggagtagatatcgtatgtaaccatgcaagtgacctgcaaagaa |
44629040 |
T |
|
| Q |
307 |
agcaaggattgtcctacgagatggagagtaccctcctacaagatttgtgatttctcctttcttgagaaacatttcagggaatgatgcatcctttgctggc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44629039 |
agcaaggattgtcctacgagatggagagtaccctcctacaagatttgtgatttctcctttcttgagaaacatttcagggaatgatgcatcctttgctggc |
44628940 |
T |
|
| Q |
407 |
ttgaatccttcagatgtatttgcattgcaaagaacccttattgaattgttgaacaagttgtcctcgtaagcagatgcatctggaccctgaacaatgcaca |
506 |
Q |
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| T |
44628939 |
ttgaatccttcagatgtatttgcattgcaaagaacccttattgaattgttgaacaagttgtcctcgtaagcagatgcatctggaccctgaacaatgcaca |
44628840 |
T |
|
| Q |
507 |
aaaaatcaaattatttgcatgcttgtattctctccatttgagtcataatgtgaaatgggatagaatcgcttacccaatcgtggcaagagagcatgaaatg |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628839 |
aaaaatcaaattatttgcatgcttgtattctctccatttgagtaataatgtgaaatgggatagaatcgcttacccaatcgtggcaagagagcatgaaatg |
44628740 |
T |
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| Q |
607 |
atcatggcctaaggactgattccagaagggatatttatgagatataacatgtatgtagtcttttacagtaacaccaatgggagttttatcattggatcca |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44628739 |
atcatggcctaaggactgattccagaagggatatttatgagatataacatggatgtagtctttcacagtaacaccaatgggagttttatcattggatcca |
44628640 |
T |
|
| Q |
707 |
cccacgtagagatattcaaccatcataaccacactgaaaggtagaaaatacacaaaagcttcatttggatcattagtgcgatagtaccttcccttttcca |
806 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628639 |
cccacgtagagatattcaaccatcataaccacactgaaaggtagaaaatacacaaaagcttcatttggatcattagtgcgatagtaccttcccttttcca |
44628540 |
T |
|
| Q |
807 |
tttcatttatgaatattccctctgttgagtatatatctttgcttaaaccattatgaaacagtggtggttccccctcctcatacacaaaaatcttgaacac |
906 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628539 |
tttcatttatgaatattccttctgttgagtatatatctttgcttaaaccattatgaaacagtggtggttccccctcctcatacacaaaaatcttgaacac |
44628440 |
T |
|
| Q |
907 |
cttctccatctctagataactcctgt-gac-aaaaatatc-acaacgagttcaactttttacggcgtc-acaaattaaaatcatcatttgtaggctgaaa |
1002 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
44628439 |
cttctccatctctagataactcctgtggacaaaaaatatcaacaacgagttcaactttttacggcgtcaacgaattaaaatcatcatttgtaggctgaaa |
44628340 |
T |
|
| Q |
1003 |
ataaaatgcacctatg-aaagcattggagtttctgtaaattggtccttgaagaacataatc-tggtcttggt-ggttgatg-taaattttgaac-ttgct |
1097 |
Q |
| |
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|||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||||||||| ||||| |
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| T |
44628339 |
ataaaatgtacctatgaaaagcattggggtttctgtaaattggtccttgaggaacataatcttggtcttggtgggttgatgttaaattttgaactttgct |
44628240 |
T |
|
| Q |
1098 |
agcttctttgatggaatac |
1116 |
Q |
| |
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||||||||||||||||||| |
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| T |
44628239 |
agcttctttgatggaatac |
44628221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 49302353 - 49302273
Alignment:
| Q |
95 |
acaggcacacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttg |
175 |
Q |
| |
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|||||||||||||||||| | || | |||||| |||||||| || || |||||| ||||||||||||| | ||| |||||| |
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| T |
49302353 |
acaggcacacattctgcataaattgattccacaattcttgggctagccacttcaaaaccacttggacaaagacagaacttg |
49302273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 47727967 - 47728019
Alignment:
| Q |
119 |
gcttccactattcttggacttgctacttcataaccacttggacacaaacaaaa |
171 |
Q |
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|||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
47727967 |
gcttccacaattcttggactagccacttcatatccacttggacacaaacaaaa |
47728019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 47725777 - 47725853
Alignment:
| Q |
101 |
acacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttgct |
177 |
Q |
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|||||| ||||| | || |||||||| | |||||||||||| ||||||| ||||| || ||||||||||||||||| |
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| T |
47725777 |
acacatcctgcataaattgcttccaccactcttggacttgccacttcatgtccactagggcacaaacaaaacttgct |
47725853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 47705267 - 47705304
Alignment:
| Q |
140 |
gctacttcataaccacttggacacaaacaaaacttgct |
177 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||| |
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| T |
47705267 |
gctacttcatagccacttggacacaagcaaaacttgct |
47705304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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