View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617-Insertion-5 (Length: 540)
Name: NF5617-Insertion-5
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 24917072 - 24917513
Alignment:
| Q |
8 |
ttcataatctcaaaa-aaggaaatataaagggttgaccnnnnnnnncatcatagttaaacaaattggaaaatattgatcgtacttacatgttactcctct |
106 |
Q |
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| T |
24917072 |
ttcataatctcaaaacaagtatatataaagggttgaccaaaaaaaacatcatagttaaataaattgtaaaatattgatcgtacttacatgttactcctct |
24917171 |
T |
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| Q |
107 |
gactttattccttgaggaatcatttgcaacagcttctgaggttgtttttgttatcaatgtaaaaaagcttttgaaaacagacttgaaatatgtcatagta |
206 |
Q |
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| T |
24917172 |
gactttattcctcgaggaatcatttgcaacagcttctgaggttgtttttgttatcaatgtaaaaaagcttttgaaaacagacttgaaatatgtcatagta |
24917271 |
T |
|
| Q |
207 |
ctatgattatgctcatgattgtgcttatttgtgacattggtattgcttgcactaccacttttgtgaccaattttgtttcttctttgcttagattgatgca |
306 |
Q |
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| T |
24917272 |
ctatgattatgctcatgattgtgcttatttgtgacattggtattgcttgcactaccacttttgtgaccaattttgtttcttctttggttagattgatgca |
24917371 |
T |
|
| Q |
307 |
agtttgggcttgatggtttcttcatttgttgaagctaaagagtattcaatttcaataacatctctttttaaccaatataatcaaaaggaatatgatttaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24917372 |
agtttgggcttgatggtttcttcatttgttgaagctaaagagtattcaatttcaataacatctctttttaaccaatataatcaaaaggaatatgatttaa |
24917471 |
T |
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| Q |
407 |
gttgcttgcatcatttgttgtcttgtgtaatttcattcaaac |
448 |
Q |
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| T |
24917472 |
gttgctttcatcttttgttgtcttgtgtaatttcattcaaac |
24917513 |
T |
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