View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617-Insertion-6 (Length: 465)
Name: NF5617-Insertion-6
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 34642126 - 34642581
Alignment:
| Q |
8 |
gtcccatgctatgagaggagaaaaggtttgaatgttg-aatggatgttacgtgaacaataggttacataatgaaaaggagataaaatagatgaagtgttt |
106 |
Q |
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| T |
34642126 |
gtcccatgctatgagtggacaaaaaattt-aatgttgcaatggatgttacgtgaacaattgtttacataatgaaaaggagataaaatagatgaagtgttt |
34642224 |
T |
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| Q |
107 |
gcgcttctgattcttaaagtccaataacatgttagcttagaatactcaattttgatacatttttcagatgatattcatgtttggttggttgtaaatattt |
206 |
Q |
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| T |
34642225 |
gcgcttctgattcttaaagtccaataac--gttagccaagaatactcaatttagatacatttttcagatgatattcatgtttgggcggttgtaaatattt |
34642322 |
T |
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| Q |
207 |
attgtttgctaaatgtgagtctcgtaacatttaagggaaatatgattacacagctagctattctacttagataagtttgtcaagaattagtttatgaatg |
306 |
Q |
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| T |
34642323 |
attgtttgctaaatgtgagtctcgtaacatttaagggaaatatgattacacagctagctattatacttagataagtttgtcaagaattagtttatgaatg |
34642422 |
T |
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| Q |
307 |
atataagtattagaaccaatgttttaaaaaatagagcggatattatacggcgaaccaaacaaatctgttaaatcgtaatccaaatcgttcaa-tctagtt |
405 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| | ||||| ||| || |
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| T |
34642423 |
atataagtattagaagcaatgttttaaaaaatagagcggatactatacggcgaaccaaacaaacctgttaaaccgtaattcaaaccattcaaccctaatt |
34642522 |
T |
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| Q |
406 |
tgatgtgattcatcctgacaagttctcaatttcaacaggtcgaaccaactatggtatcaa |
465 |
Q |
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| T |
34642523 |
tgatgtgattcaccctgacaagttcacga-ttcaacggatcaaaccaactatgatatcaa |
34642581 |
T |
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