View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617_high_9 (Length: 208)
Name: NF5617_high_9
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617_high_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 7278881 - 7279067
Alignment:
| Q |
22 |
cctcaacacgcttgccttcaccgccttcagctgactctgtgggacccacgatttgaatttgatcaacaaattcgtgcagaactatagcccttttgataat |
121 |
Q |
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| T |
7278881 |
cctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataat |
7278980 |
T |
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| Q |
122 |
cgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaagaagcaaattcatgattgtttcagcgat |
208 |
Q |
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| T |
7278981 |
cgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaagaagcaaattcataattgtttcagcgat |
7279067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 7374958 - 7374772
Alignment:
| Q |
22 |
cctcaacacgcttgccttcaccgccttcagctgactctgtgggacccacgatttgaatttgatcaacaaattcgtgcagaactatagcccttttgataat |
121 |
Q |
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| T |
7374958 |
cctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgataat |
7374859 |
T |
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| Q |
122 |
cgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacctaagaagcaaattcatgattgtttcagcgat |
208 |
Q |
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| T |
7374858 |
cgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacctaagaagcaaattcataattgtttcagcgat |
7374772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 5848215 - 5848177
Alignment:
| Q |
163 |
taacagaatccaacctaagaagcaaattcatgattgttt |
201 |
Q |
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| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttt |
5848177 |
T |
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