View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5617_low_1 (Length: 787)

Name: NF5617_low_1
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5617_low_1
NF5617_low_1
[»] chr4 (5 HSPs)
chr4 (312-774)||(2860984-2861434)
chr4 (18-290)||(2860622-2860894)
chr4 (87-140)||(47586277-47586330)
chr4 (87-133)||(30305865-30305911)
chr4 (87-124)||(32898512-32898549)
[»] chr6 (4 HSPs)
chr6 (97-145)||(29646719-29646767)
chr6 (77-126)||(3568067-3568116)
chr6 (97-140)||(24129369-24129412)
chr6 (87-132)||(34845638-34845683)
[»] chr8 (7 HSPs)
chr8 (77-140)||(34873145-34873208)
chr8 (87-133)||(37708757-37708803)
chr8 (96-125)||(8183394-8183423)
chr8 (100-149)||(11406650-11406699)
chr8 (87-140)||(36035137-36035190)
chr8 (89-122)||(39479096-39479129)
chr8 (96-145)||(43403346-43403395)
[»] chr3 (8 HSPs)
chr3 (97-132)||(16991903-16991938)
chr3 (87-133)||(15085642-15085688)
chr3 (87-140)||(36478146-36478199)
chr3 (77-133)||(40739159-40739215)
chr3 (87-125)||(9114085-9114123)
chr3 (87-133)||(41710649-41710695)
chr3 (87-133)||(46767409-46767455)
chr3 (87-140)||(40723618-40723671)
[»] scaffold0264 (1 HSPs)
scaffold0264 (96-134)||(13453-13491)
[»] chr7 (7 HSPs)
chr7 (83-164)||(663469-663550)
chr7 (96-132)||(20421726-20421762)
chr7 (96-131)||(37710153-37710188)
chr7 (96-131)||(43404941-43404976)
chr7 (77-131)||(6441309-6441363)
chr7 (100-133)||(3408952-3408985)
chr7 (99-132)||(28735196-28735229)
[»] chr2 (7 HSPs)
chr2 (77-125)||(33587163-33587211)
chr2 (82-145)||(13194927-13194990)
chr2 (97-143)||(11265086-11265132)
chr2 (86-124)||(11268364-11268402)
chr2 (87-125)||(14518358-14518396)
chr2 (77-131)||(34463612-34463666)
chr2 (76-125)||(36748960-36749009)
[»] chr1 (3 HSPs)
chr1 (77-125)||(16182272-16182320)
chr1 (89-124)||(36795225-36795260)
chr1 (97-132)||(41972692-41972727)
[»] chr5 (4 HSPs)
chr5 (96-127)||(885125-885156)
chr5 (86-121)||(36564379-36564414)
chr5 (97-140)||(37104129-37104172)
chr5 (87-132)||(6167279-6167324)
[»] scaffold0370 (2 HSPs)
scaffold0370 (96-129)||(10450-10483)
scaffold0370 (96-129)||(15740-15773)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 312 - 774
Target Start/End: Original strand, 2860984 - 2861434
Alignment:
Q  312 tagatacacaatagtataagccaatcacagagtgagtattattataaacgacgttcaaaagagggtatcggtggcattagtcttatcttatatat--tga 409  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||| || ||| ||| ||| || | |||| ||||||| ||||| |||||||  |||    
T  2860984 tagatccacaatagtttaagccaatcaccgagtgagtattattataaaggatgtttaaa-gagagtgttggtgacattagtgttatcctatatatattga 2861082  T
Q  410 caaaaagcatacaatgttcattgttgaactccattgtttgttccttggcaacagcacagaaatctcaaccaacctcataaactaatcaaatctctaacca 509  Q
    ||||||||       |||||||||      |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  2861083 caaaaagc-------gttcattgt------ccattgtttgttccttggcaacagcacataaatctcaacaaacctcataaactaatcaaatctctaacca 2861169  T
Q  510 ccataccatcatggcacacgacaacatctccaacgaacaaccaccaccggaaacacccctcctccgccgcaccttcttccatctcccatcaaccctcaaa 609  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2861170 ccataccatcatggcacacgacaacatctccaacgaccaaccaccaccggaaacacccctcctccgccgcaccttcttccatctcccatcaaccctcaaa 2861269  T
Q  610 ctcaaaacctccctctgctcagaactctccggcgccgtcggagacttaggtacatacatccccatcgtcttagccttatcactagtcaacaaccttgacc 709  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2861270 ctcaaaaccaccctctgctcagaactctccggcgccgtcggagacttaggtacatacatccccatcgtcttagccttatcactagtcaacaaccttgacc 2861369  T
Q  710 tcacaaccacactcatcttcacttcactctacaacatcaccaccggcctcttcttcggtctgcct 774  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2861370 tcacaaccacactcatcttcacttcactctacaacatcaccaccggcctcttcttcggtctgcct 2861434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 2860622 - 2860894
Alignment:
Q  18 ctttaaacgatgatgcatataaattaaactcaatttttatacttaatatannnnnnnnatcaaatagtatagtgacttgagctcacacattttaaatatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||||  ||||||||||||||||||||||||||||||||    
T  2860622 ctttaaacgatgatgcatataaattaaactcaatttttatatttaatat-ttttttttatcaaataacatagtgacttgagctcacacattttaaatatg 2860720  T
Q  118 gagaagtgagatgtccaaggttcaaactttgatcctaaatatattatgcaatattttaccaattgtgttaagttgaagtgggtgatgataatttctaatc 217  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||    
T  2860721 gagaagtgagatgtctaaggttcgaactttgatcctaaatatattatgcaatattctaccaattgtgttaagttgacgggggcgatgataatttctaatc 2860820  T
Q  218 ttataaaatggtgcataatttttattttactaatcctaatttaaaattatcttatcaa-gaatgccagcaacac 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2860821 ttataaaatggtgcataatttttattttactaatcctaatttaaaattatcttatcaaggaatgccaacaacac 2860894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 47586330 - 47586277
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  47586330 tagtgatttgagctcacacattttaaatgtggagaagtgagatgtccaatgttc 47586277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 30305911 - 30305865
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtcc 133  Q
    ||||| || ||||||||||||||||||| |||||||||||| |||||    
T  30305911 tagtggctggagctcacacattttaaatgtggagaagtgaggtgtcc 30305865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 32898549 - 32898512
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagt 124  Q
    ||||| || |||||||||||||||||||||||||||||    
T  32898549 tagtggctggagctcacacattttaaatatggagaagt 32898512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 29646719 - 29646767
Alignment:
Q  97 agctcacacattttaaatatggagaagtgagatgtccaaggttcaaact 145  Q
    |||||||||||||||||| | |||||||||||||| |||||||||||||    
T  29646719 agctcacacattttaaatgtagagaagtgagatgtacaaggttcaaact 29646767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 3568116 - 3568067
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtga 126  Q
    |||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  3568116 tcaaatagtatagtgaccggagctcatacattttaaatgtggagaagtga 3568067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 24129412 - 24129369
Alignment:
Q  97 agctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    |||||||||||||| ||| |||||||||| ||||||||||||||    
T  24129412 agctcacacatttttaatgtggagaagtgggatgtccaaggttc 24129369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 34845683 - 34845638
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtc 132  Q
    |||||||| |||||||  ||||||||||||||||||||||| ||||    
T  34845683 tagtgactagagctcatgcattttaaatatggagaagtgaggtgtc 34845638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 34873208 - 34873145
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    ||||||||| ||||| || ||||||||||||||||||| |||||||||| | ||||| ||||||    
T  34873208 tcaaatagtctagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttc 34873145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 37708803 - 37708757
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtcc 133  Q
    ||||| || ||||||||||||||||||| |||||||||| |||||||    
T  37708803 tagtggctggagctcacacattttaaatgtggagaagtgggatgtcc 37708757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 8183423 - 8183394
Alignment:
Q  96 gagctcacacattttaaatatggagaagtg 125  Q
    ||||||||||||||||||||||||||||||    
T  8183423 gagctcacacattttaaatatggagaagtg 8183394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 11406650 - 11406699
Alignment:
Q  100 tcacacattttaaatatggagaagtgagatgtccaaggttcaaactttga 149  Q
    ||||||||||||||| |||||||||||| |||||| ||||| ||| ||||    
T  11406650 tcacacattttaaatgtggagaagtgaggtgtccagggttcgaaccttga 11406699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 36035137 - 36035190
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    ||||| || ||||||||||||||||||| |||||||||| | ||||| ||||||    
T  36035137 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttc 36035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 39479096 - 39479129
Alignment:
Q  89 gtgacttgagctcacacattttaaatatggagaa 122  Q
    |||| |||||||||||||||||||||||||||||    
T  39479096 gtgatttgagctcacacattttaaatatggagaa 39479129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 43403395 - 43403346
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagatgtccaaggttcaaact 145  Q
    ||||||||||| ||||| | |||||||||| |||||||||||||| ||||    
T  43403395 gagctcacacaatttaattgtggagaagtgggatgtccaaggttcgaact 43403346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 16991938 - 16991903
Alignment:
Q  97 agctcacacattttaaatatggagaagtgagatgtc 132  Q
    ||||||||||||||||||||||||||||||||||||    
T  16991938 agctcacacattttaaatatggagaagtgagatgtc 16991903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 15085642 - 15085688
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtcc 133  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||    
T  15085642 tagtggctggagctcacacattttaaatatggagaagtgaggtgtcc 15085688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 36478146 - 36478199
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    ||||| || ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  36478146 tagtggctggagctcacacatttttaatgtggagaagtgagatgtccgaggttc 36478199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 40739159 - 40739215
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtgagatgtcc 133  Q
    |||| |||| ||||| || |||||||||||||||||| ||||||||||||| |||||    
T  40739159 tcaagtagtctagtggctagagctcacacattttaaacatggagaagtgaggtgtcc 40739215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 9114123 - 9114085
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtg 125  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  9114123 tagtgactggagctcacacattttaaatgtggagaagtg 9114085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 41710695 - 41710649
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtcc 133  Q
    ||||| || ||||||||||||||||||| |||||||||||| |||||    
T  41710695 tagtggctggagctcacacattttaaatgtggagaagtgaggtgtcc 41710649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 46767455 - 46767409
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtcc 133  Q
    ||||| || ||||||||||||||||||| |||||||||| |||||||    
T  46767455 tagtggctggagctcacacattttaaatgtggagaagtgggatgtcc 46767409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 40723618 - 40723671
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    |||||| | ||| ||||||||||||||| |||||||||||| |||| |||||||    
T  40723618 tagtgattagagttcacacattttaaatgtggagaagtgaggtgtctaaggttc 40723671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 13453 - 13491
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagatgtcca 134  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  13453 gagctcacacattttaaatatggagaagtgggatgtcca 13491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 663550 - 663469
Alignment:
Q  83 agtatagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttcaaactttgatcctaaatatattat 164  Q
    |||||||||||| |||||||||||||||||||| |||||| | |||  || ||||||| |||||| | |||  |||||||||    
T  663550 agtatagtgactggagctcacacattttaaatacggagaaattagacatctaaggttcgaactttaaccctgcatatattat 663469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 20421726 - 20421762
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagatgtc 132  Q
    ||||||||||||||||||| |||||||||||||||||    
T  20421726 gagctcacacattttaaatgtggagaagtgagatgtc 20421762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 37710188 - 37710153
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagatgt 131  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37710188 gagctcacacattttaaatgtggagaagtgagatgt 37710153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 43404941 - 43404976
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagatgt 131  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43404941 gagctcacacattttaaatgtggagaagtgagatgt 43404976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 6441363 - 6441309
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtgagatgt 131  Q
    |||| ||| |||||||||  |||||||||| ||||| ||||||||||||||||||    
T  6441363 tcaagtagcatagtgactaaagctcacacaatttaattatggagaagtgagatgt 6441309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 3408985 - 3408952
Alignment:
Q  100 tcacacattttaaatatggagaagtgagatgtcc 133  Q
    ||||||||||||||||| ||||||||||||||||    
T  3408985 tcacacattttaaatatagagaagtgagatgtcc 3408952  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 28735196 - 28735229
Alignment:
Q  99 ctcacacattttaaatatggagaagtgagatgtc 132  Q
    ||||||||||||||||||||||||||| ||||||    
T  28735196 ctcacacattttaaatatggagaagtgggatgtc 28735229  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 33587211 - 33587163
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtg 125  Q
    |||| |||| |||||||| ||||||||| ||||||||||||||||||||    
T  33587211 tcaagtagtctagtgactagagctcacatattttaaatatggagaagtg 33587163  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 13194927 - 13194990
Alignment:
Q  82 tagtatagtgacttgagctcacacattttaaatatggagaagtgagatgtccaaggttcaaact 145  Q
    ||||||| || || |||||||||||||||| ||||  ||||||||| |||||||||||| ||||    
T  13194927 tagtataatggctcgagctcacacattttatatataaagaagtgaggtgtccaaggttcgaact 13194990  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 11265086 - 11265132
Alignment:
Q  97 agctcacacattttaaatatggagaagtgagatgtccaaggttcaaa 143  Q
    |||||||||||||||||  |||| ||||||||||||| |||||||||    
T  11265086 agctcacacattttaaacgtggaaaagtgagatgtccgaggttcaaa 11265132  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 11268402 - 11268364
Alignment:
Q  86 atagtgacttgagctcacacattttaaatatggagaagt 124  Q
    |||||| || |||||||||||||||||||||||||||||    
T  11268402 atagtggctggagctcacacattttaaatatggagaagt 11268364  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 14518396 - 14518358
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtg 125  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  14518396 tagtggctggagctcacacattttaaatatggagaagtg 14518358  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 34463612 - 34463666
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtgagatgt 131  Q
    |||| |||| |||||||||||| ||||||||||||||| || ||||||| |||||    
T  34463612 tcaagtagtttagtgacttgaggtcacacattttaaatgtgaagaagtgggatgt 34463666  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 36749009 - 36748960
Alignment:
Q  76 atcaaatagtatagtgacttgagctcacacattttaaatatggagaagtg 125  Q
    ||||| |||| |||| ||| ||||||||||||||||||| ||||||||||    
T  36749009 atcaagtagtttagtaactggagctcacacattttaaatgtggagaagtg 36748960  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 16182320 - 16182272
Alignment:
Q  77 tcaaatagtatagtgacttgagctcacacattttaaatatggagaagtg 125  Q
    |||||||  ||||||||||||| ||||||||||||||| ||||||||||    
T  16182320 tcaaataacatagtgacttgagttcacacattttaaatgtggagaagtg 16182272  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 36795260 - 36795225
Alignment:
Q  89 gtgacttgagctcacacattttaaatatggagaagt 124  Q
    |||| |||||||||||||||||||||||||||||||    
T  36795260 gtgatttgagctcacacattttaaatatggagaagt 36795225  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 41972692 - 41972727
Alignment:
Q  97 agctcacacattttaaatatggagaagtgagatgtc 132  Q
    ||||||||||||||||||||||||||||||| ||||    
T  41972692 agctcacacattttaaatatggagaagtgaggtgtc 41972727  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 127
Target Start/End: Original strand, 885125 - 885156
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgag 127  Q
    ||||||||||||||||||||||||||||||||    
T  885125 gagctcacacattttaaatatggagaagtgag 885156  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 36564379 - 36564414
Alignment:
Q  86 atagtgacttgagctcacacattttaaatatggaga 121  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36564379 atagtgactggagctcacacattttaaatatggaga 36564414  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 37104172 - 37104129
Alignment:
Q  97 agctcacacattttaaatatggagaagtgagatgtccaaggttc 140  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||    
T  37104172 agctcacacattttaaatatgaagaagtgtgatgtctaaggttc 37104129  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 6167324 - 6167279
Alignment:
Q  87 tagtgacttgagctcacacattttaaatatggagaagtgagatgtc 132  Q
    ||||| || ||||||||||||||||||| |||||||||||| ||||    
T  6167324 tagtggctagagctcacacattttaaatgtggagaagtgaggtgtc 6167279  T

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Target: scaffold0370 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 10450 - 10483
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagat 129  Q
    |||||||||||||||||| |||||||||||||||    
T  10450 gagctcacacattttaaacatggagaagtgagat 10483  T

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Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 15740 - 15773
Alignment:
Q  96 gagctcacacattttaaatatggagaagtgagat 129  Q
    |||||||||||||||||| |||||||||||||||    
T  15740 gagctcacacattttaaacatggagaagtgagat 15773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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