View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617_low_2 (Length: 498)
Name: NF5617_low_2
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 52860248 - 52860738
Alignment:
| Q |
1 |
aactcacaacacacaaatggcaacaacggctatatttctcaccttcattgcattaaccttaacacatgcagcagc---agcaacacaaatcaactcatct |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
52860248 |
aactcacaacacacaaatggcaacaacggctatatttctcaccttcattgcattaaccttaacacattcagcagctgcagcaacacaaatcaactcatct |
52860347 |
T |
|
| Q |
98 |
cattccgaaatccaagccttaacaatcttcaaactaaaccttcttgacccactcaatgccttaacaacttgggatccatcaacaccttcagcaccatgtg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860348 |
cattccgaaatccaagccttaacaatcttcaaactaaaccttcttgacccactcaatgccttaacaacttgggatccatcaacaccttcagcaccatgtg |
52860447 |
T |
|
| Q |
198 |
attggcatggcattctctgttacaacaacaataacagagttcacactatacgtttacctcgtcttcaactcactggttcaatatcttcatcactctctaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860448 |
attggcatggcattctctgttacaacaacaataacagagttcacactatacgtttacctcgtcttcaactcactggttcaatatcttcatcactctctaa |
52860547 |
T |
|
| Q |
298 |
tctctcacagcttcgtaaacttagtctccattccaacaaccttaactcatcaataccttcttctctttctcattgtctcttcctacgtgctgtttatctt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52860548 |
tctctcacagcttcgtaaacttagtctccattccaacaaccttaactcatcaataccttcttctctttctcattgtctcttcctacgtgctgtttatctt |
52860647 |
T |
|
| Q |
398 |
cacaacaactctctctctggttatctcccttcttcacttctcaccctcaccaaccttcaaattctcaaccttgctcgtaactttctctctg |
488 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52860648 |
cacaacaactctctctctggttatctccctccttcacttctcaccctcaccaatcttcaaattctcaaccttgctcgtaactttctctctg |
52860738 |
T |
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