View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617_low_3 (Length: 488)
Name: NF5617_low_3
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 37710639 - 37710182
Alignment:
| Q |
13 |
aaaatacctacaaaattgcaaagagaatttgtgcactctctcaacaaaaattatctcgtaattaccagatcaaatgatccgaccagaaacctgattgttc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||| |||||||||||||| |
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| T |
37710639 |
aaaatacctacaaaattgcaaagagaatttgtgcactctctcaacaacaattctctcgtaattaccagatgagatgatccgaccaaaaacctgattgttc |
37710540 |
T |
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| Q |
113 |
aggattgggacgaggcccataacctcaacggatcgggtcacctctcaacttcaacgcatacgcggcccatagcatggactccccctaaatccacttaatc |
212 |
Q |
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| T |
37710539 |
aagactgggacgaggcccataacctcaacggatcgggtcacctctcaacttcaacgcatacgcagcccatagcatggactccccctaaatccacttaatc |
37710440 |
T |
|
| Q |
213 |
aaagtgtgtaagttaagttggaccatccaaaccggatccaaggcaagcttaccacgattttctcataggagtcctccgtggacacttgttcgggtaaggg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
37710439 |
aaagtgtgtaagttaagttggaccatccaaaccggatccaaggcaagcttaccacgattttctcataggagtcctctgaggacacttgttcgggtaaggg |
37710340 |
T |
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| Q |
313 |
tttgagggcttgaaaccccaattcattgtgataaagtctaactcatagcctccacacacgtaaacacactttataccatgaatacctcacatattcggtg |
412 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
37710339 |
tttgagggcttgaaaccccaattcatcatgataaagtctaactcatagcctccacacacgtaaacacactttataccctgaatacctcacatattcagtg |
37710240 |
T |
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| Q |
413 |
cattctaacttgatcgtcgaagtgtttgcagttataccacccactacggagaagaagc |
470 |
Q |
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| T |
37710239 |
cattctaacttgatcgtcgaagtgtttgcagttataccacccattgcggagaagaagc |
37710182 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 25640641 - 25640596
Alignment:
| Q |
24 |
aaaattgcaaagagaatttgtgcactctctcaacaaaaattatctc |
69 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
25640641 |
aaaattgcaaagagaatttgtgcattctcacaacaaaaattatctc |
25640596 |
T |
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