View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617_low_4 (Length: 456)
Name: NF5617_low_4
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 1604303 - 1603873
Alignment:
| Q |
18 |
tgtaccatatccgaatttcccaacagaaaatcaaaatttacaagctaggtggtgagtgcaactacatggatataatgtccaattttaaggtggagaattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1604303 |
tgtaccatatccgaatttcccaacagaaaatcaaaatttacaagctaggtggtgagtgcaactacatggatataatgtccaattttaaggtgtagaattg |
1604204 |
T |
|
| Q |
118 |
aatgtcattggagcagcagttagaaaaatgaaaagtagctagccacactagcaattgagaaaaaacaatactatatcacttgttagctttaagccaatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1604203 |
aatgtcattggagcagcagttagaaaaatgaaaagtagctagccactctagcaattgagaaaaaacaatactgtatcacttgttagctttaagccaatca |
1604104 |
T |
|
| Q |
218 |
aggatacccttttctgcttctgaaagcttcccctcctcctttgcttgcaaacccccttctatgaactcaaagtaatctttgtaattacgcttgtaattac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1604103 |
aggatacccttttctgcttctgaaagcttcccctcctcctttgcttgcaaacccccttctatgaactcaaagtaatctttgtaattacgcttgtaattac |
1604004 |
T |
|
| Q |
318 |
tatcaaccctctgccacacacaaaaactgtgattaaattgaatacaaaatatgacatactacaacataaaattaaatacaccactttaagtgtgttactt |
417 |
Q |
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| T |
1604003 |
tatcaaccctctgccacacacaaaaactgtgattaaattgaatactaaatatgacatactacaacataaaattaaatacaccactttgagtgtgttactt |
1603904 |
T |
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| Q |
418 |
acctctttgtcatttttcaccttgttttcct |
448 |
Q |
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| T |
1603903 |
acctctttgtcatttttctccttgttttcct |
1603873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 1604333 - 1604389
Alignment:
| Q |
257 |
tttgcttgcaaacccccttctatgaactcaaagtaatctttgtaattacgcttgtaa |
313 |
Q |
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| T |
1604333 |
tttgcttgcaaacccccttctatgaactcaaagtaatccttgtaattacgctagtaa |
1604389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 192 - 448
Target Start/End: Complemental strand, 48007522 - 48007265
Alignment:
| Q |
192 |
atcacttgttagctttaagccaatcaaggatacccttttctgcttctgaaagcttcccctcctcctttgcttgcaaacccccttctatgaactcaaagta |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
48007522 |
atcacttgttagctttaagccaatcaaggatacccttttctgcttctgaaagcttcccctcctcctttccttgcaaacccccttctacgaactcaaagta |
48007423 |
T |
|
| Q |
292 |
atctttgtaattacgcttgtaattactatcaaccctctgccacacacaaaaactgtgattaaattgaatacaaaat-atgacatactacaacataaaatt |
390 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
48007422 |
atccttgtaattacgcttgtaataactatcaaccctctgccacacacaaagactgtgattaaattcaatactaaataatgacatactacaacataaaatt |
48007323 |
T |
|
| Q |
391 |
aaatacaccactttaagtgtgttacttacctctttgtcatttttcaccttgttttcct |
448 |
Q |
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|||||| | |||| || | |||||||||||||||||||||||| |||||||||||| |
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|
| T |
48007322 |
aaataccctgcttttagagcattacttacctctttgtcatttttctccttgttttcct |
48007265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 48007626 - 48007571
Alignment:
| Q |
18 |
tgtaccatatccgaatttcccaacagaaaatcaaaatttacaagct-aggtggtga |
72 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
48007626 |
tgtaccatatccaaattttccaacagaaaatcaaaatttacaagctaaggtggtga |
48007571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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