View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5617_low_6 (Length: 369)
Name: NF5617_low_6
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5617_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 31 - 353
Target Start/End: Original strand, 23355112 - 23355430
Alignment:
| Q |
31 |
tgacattactattatataagcaaaaattaa-catacaacaaaatcacagttgttagtagtttatcaaacaagcactgacttaatttacacgattggcct- |
128 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || | | |
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| T |
23355112 |
tgacattactattatataagcaaaaattaaacatacaataaaatcacagttgttagtagtttatcaaacaagcactgacttaattccaaacat---cttg |
23355208 |
T |
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| Q |
129 |
actatttaacatcattttaacatttgatttataccgttatttatgacaacgtgacaacgtgaaatcttcaatgaatgaataaataaaactcgcatagtta |
228 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23355209 |
actat---acatcattttaacatttgatttataccgttatttatgacaatgtgacaacgtgaaatcttcaatgaatgaataaataaaactcgcatagtta |
23355305 |
T |
|
| Q |
229 |
ttagtgtggtgtccttgactccacaggtgggaacataatgcatggtgtgaagactgaagaggaatggttgttgagagatgagaagattgcaaattctcat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23355306 |
ttagtgtggtgtccttgactccacaggtgggaacataatgcatggtgtgaagactgaagaggaatggttgttgagagatgagaagattgcaaattctcat |
23355405 |
T |
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| Q |
329 |
gaatgaaagtgggccatgtcatttt |
353 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
23355406 |
gaatgaaagtgggccatgtcatttt |
23355430 |
T |
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