View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5617_low_7 (Length: 324)

Name: NF5617_low_7
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5617_low_7
NF5617_low_7
[»] chr7 (5 HSPs)
chr7 (9-319)||(5871367-5871677)
chr7 (45-110)||(21861312-21861377)
chr7 (45-110)||(40746283-40746348)
chr7 (48-110)||(21861550-21861612)
chr7 (58-110)||(40746034-40746086)
[»] chr5 (4 HSPs)
chr5 (48-110)||(8287822-8287884)
chr5 (45-110)||(27132994-27133059)
chr5 (58-110)||(15480590-15480642)
chr5 (58-110)||(42295610-42295662)
[»] chr1 (3 HSPs)
chr1 (45-110)||(51589824-51589889)
chr1 (45-110)||(51589010-51589075)
chr1 (66-110)||(7653515-7653559)
[»] chr8 (4 HSPs)
chr8 (48-112)||(39743550-39743614)
chr8 (64-110)||(38476075-38476121)
chr8 (48-109)||(4828314-4828375)
chr8 (58-110)||(4963385-4963437)
[»] chr4 (3 HSPs)
chr4 (48-110)||(53559291-53559353)
chr4 (48-110)||(53828524-53828586)
chr4 (58-110)||(21685029-21685081)
[»] chr2 (3 HSPs)
chr2 (48-110)||(5711440-5711502)
chr2 (64-110)||(17525100-17525146)
chr2 (48-110)||(19570975-19571037)
[»] chr3 (3 HSPs)
chr3 (65-110)||(3975359-3975404)
chr3 (57-110)||(33640075-33640128)
chr3 (58-110)||(8018999-8019051)
[»] scaffold0766 (1 HSPs)
scaffold0766 (48-108)||(6295-6355)
[»] chr6 (1 HSPs)
chr6 (58-110)||(27656489-27656541)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 5871677 - 5871367
Alignment:
Q  9 gtcgaacaatatatggcctgtacatgtatctctaactgagggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttct 108  Q
    |||| |||| ||||||| || |||||||||| |||| |||||||||| |||||| |||||||| |||||||| |||||||||| ||| ||| ||||||||    
T  5871677 gtcggacaaaatatggcatgaacatgtatctataaccgagggcaatcaccacctcacaagccggttttgtgggattttgttagacccaaccgcaatttct 5871578  T
Q  109 aaaactacctttcatgcagcatgattaaaatttgataactaccgattgtttttgatttctgttgtgaatggattatggaacttaatcatagctttaatca 208  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5871577 aaaattacctttcatgcagcaagattaaaattagataactaccgattgtttttgagttctgttgtgaatggattatggaacttaatcatagctttaatca 5871478  T
Q  209 tgtctatttcaaaccttgttgcttgaaactaaagatttgaagtttgctttgtggatggaaaaagcagtttaaatggtccaggtgaataacggcttcttgt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5871477 tgtctatttcaaaccttgttgcttgaaactaaagatttgaagtttgctttgtggatggaaaaagcagtttaaatggtccaggtgaataacggcttcttgt 5871378  T
Q  309 aggattgcttt 319  Q
    |||||||||||    
T  5871377 aggattgcttt 5871367  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 21861312 - 21861377
Alignment:
Q  45 tgagggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||||||  ||||| |||||||| |||||||| ||| |||||||||| ||||| ||||||||    
T  21861312 tgagggcaatcctcaccttacaagccggttttgtgggattgtgttaggcccaaccaccatttctaa 21861377  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 40746283 - 40746348
Alignment:
Q  45 tgagggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||||||  ||||| | |||||||||||||||  || |||||||||| ||||||||||||||    
T  40746283 tgagggcaatcctcacctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaa 40746348  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 21861550 - 21861612
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||||||  ||||| |||||||||||||||||  || |||||||||| ||||| ||||||||    
T  21861550 gggcaatcctcaccttacaagccgattttgtggggttgtgttaggcccaaccaccatttctaa 21861612  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 40746086 - 40746034
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||| |||||||||||| ||| |||||| ||| ||||||||||||||    
T  40746086 cacctcacaaaccgattttgtgggattgtgttagacccaaccacaatttctaa 40746034  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 8287822 - 8287884
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||| |||||| |||||||| ||||||||  || |||||||||| ||||||||||||||    
T  8287822 gggcaatccccacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 8287884  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 27133059 - 27132994
Alignment:
Q  45 tgagggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||||||  ||||| |||||||| ||||||||  || |||||||||| ||||| ||||||||    
T  27133059 tgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 27132994  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 15480590 - 15480642
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||||||| ||||||||  || |||||||||| ||||||||||||||    
T  15480590 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 15480642  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 42295610 - 42295662
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||||||| ||||||||| || |||||||||| || |||||||||||    
T  42295610 cacctcacaagccggttttgtggagttgtgttaggcccaacgacaatttctaa 42295662  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 51589824 - 51589889
Alignment:
Q  45 tgagggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||||||  ||||| |||||||||||||||||  || |||||||||| ||||| ||||||||    
T  51589824 tgagggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttctaa 51589889  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 51589010 - 51589075
Alignment:
Q  45 tgagggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||||||  ||||| |||||||| ||||||||  || |||||||||| ||||| ||||||||    
T  51589010 tgagggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccaccatttctaa 51589075  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 7653515 - 7653559
Alignment:
Q  66 aagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||| |||||||||| ||| |||||||||| ||||||||||||||    
T  7653515 aagctgattttgtgggattgtgttaggcccaaccacaatttctaa 7653559  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 39743550 - 39743614
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaaaa 112  Q
    ||||||||  ||||| |||||||||||||||||  || |||||||||| ||||| ||||||||||    
T  39743550 gggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttctaaaa 39743614  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 38476075 - 38476121
Alignment:
Q  64 acaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||| |||||||| ||| |||||||||| ||||||||||||||    
T  38476075 acaagccggttttgtgggattatgttaggcccaaccacaatttctaa 38476121  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 4828314 - 4828375
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttcta 109  Q
    ||||||||  ||||| |||||||| ||||||||  || |||||||||| |||||||||||||    
T  4828314 gggcaatcctcacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttcta 4828375  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 4963385 - 4963437
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||||||| ||||||||  || |||||||||| ||||||||||||||    
T  4963385 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 4963437  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 53559353 - 53559291
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||||||  ||||| |||||||||||||||||  || |||||||||| ||||| ||||||||    
T  53559353 gggcaatcctcaccttacaagccgattttgtggggttgtgttaggcccaaccacgatttctaa 53559291  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 53828586 - 53828524
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||||||  ||||| | |||||||||||||||  || |||||||||| ||||||||||||||    
T  53828586 gggcaatcctcacctcataagccgattttgtggggttgtgttaggcccaaccacaatttctaa 53828524  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 21685029 - 21685081
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||||||||||||||||  || ||||| |||| ||||||||||||||    
T  21685029 cacctcacaagccgattttgtggggttgtgttaagcccaaccacaatttctaa 21685081  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 5711502 - 5711440
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||||||  |||||||||||||| ||||||||  || |||||||||| ||||| ||||||||    
T  5711502 gggcaatcctcacctaacaagccggttttgtggggttgtgttaggcccaaccacgatttctaa 5711440  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 17525146 - 17525100
Alignment:
Q  64 acaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||| |||||||||||| ||| |||||| ||||||||||||||    
T  17525146 acaagccggttttgtggaattgtgtcaggcccaaccacaatttctaa 17525100  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 19571037 - 19570975
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||||||  ||||| | ||| ||||||||||||||| |||||||||| ||||| ||||||||    
T  19571037 gggcaatcctcacctcataagtcgattttgtggaattgtgttaggcccaaccacgatttctaa 19570975  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 3975404 - 3975359
Alignment:
Q  65 caagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||||||||||||||||| |||||| ||| ||||| ||||||||    
T  3975404 caagccgattttgtggaattgtgttagacccaaccactatttctaa 3975359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 33640075 - 33640128
Alignment:
Q  57 ccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    |||||| |||||||| |||||||| ||| |||||||||| | ||||||||||||    
T  33640075 ccacctcacaagccggttttgtgggattgtgttaggcccaatcacaatttctaa 33640128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 8018999 - 8019051
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||||||| ||||||||  || |||||||||| ||||||||||||||    
T  8018999 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 8019051  T

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Target: scaffold0766 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 6295 - 6355
Alignment:
Q  48 gggcaatcgccacctaacaagccgattttgtggaattttgttaggcccgaccacaatttct 108  Q
    ||||||||  ||||| |||||||||||||||||  || |||||||||| ||||| ||||||    
T  6295 gggcaatcctcacctcacaagccgattttgtggggttgtgttaggcccaaccacgatttct 6355  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 27656489 - 27656541
Alignment:
Q  58 cacctaacaagccgattttgtggaattttgttaggcccgaccacaatttctaa 110  Q
    ||||| |||||||| ||||||||  || |||||||||| ||||||||||||||    
T  27656489 cacctcacaagccggttttgtggggttgtgttaggcccaaccacaatttctaa 27656541  T

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