View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5617_low_8 (Length: 313)

Name: NF5617_low_8
Description: NF5617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5617_low_8
NF5617_low_8
[»] chr5 (5 HSPs)
chr5 (1-263)||(11334917-11335179)
chr5 (258-304)||(11320765-11320811)
chr5 (26-163)||(11335202-11335344)
chr5 (91-164)||(11335312-11335384)
chr5 (1-45)||(9511908-9511952)
[»] chr7 (5 HSPs)
chr7 (197-298)||(26403200-26403301)
chr7 (91-180)||(44338660-44338748)
chr7 (208-278)||(3889163-3889238)
chr7 (197-275)||(10236744-10236822)
chr7 (133-195)||(26403166-26403228)
[»] chr8 (3 HSPs)
chr8 (191-254)||(32041645-32041708)
chr8 (91-180)||(20242337-20242425)
chr8 (91-180)||(20250735-20250823)
[»] chr2 (4 HSPs)
chr2 (1-170)||(38583910-38584078)
chr2 (91-186)||(29409336-29409429)
chr2 (258-304)||(32290876-32290922)
chr2 (180-240)||(1173120-1173178)
[»] chr1 (2 HSPs)
chr1 (60-210)||(9168107-9168258)
chr1 (272-304)||(15629699-15629731)
[»] chr3 (2 HSPs)
chr3 (53-114)||(42530806-42530868)
chr3 (266-304)||(50296009-50296047)
[»] chr4 (1 HSPs)
chr4 (197-249)||(7259241-7259292)
[»] scaffold0007 (2 HSPs)
scaffold0007 (191-244)||(14629-14682)
scaffold0007 (93-180)||(14663-14749)
[»] chr6 (2 HSPs)
chr6 (191-244)||(18984209-18984262)
chr6 (93-163)||(18984142-18984211)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11335179 - 11334917
Alignment:
Q  1 ttgcattgcacttctcctccccttatgattcttctaattgattgccctgcatttctcctcttttaattcttctgattgatttcacttcttcccttttgat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  11335179 ttgcattgcacttctcctccccttatgattcttctgattgattgccctgcacttctcctcttttaattcttcagattgatttcacttcttcccttttgat 11335080  T
Q  101 tctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattgatttttatgtttggttgctcctctcaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  11335079 tctttagattgattttgcacttctcccttatggattcttttgattgattgaattgcacttctccttattgatttttctgtttggttgctcctctctattg 11334980  T
Q  201 gttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttct 263  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11334979 gttcttttgtatggttgtttctctctatcggttcttttgtttggtttggtttgattgggttct 11334917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 11320811 - 11320765
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatgatgatg 304  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11320811 ggttcttatgtttagatggttctctctttgagtggttgatggtgatg 11320765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 11335344 - 11335202
Alignment:
Q  26 tgattcttctaattgattgccctgcatttctcctcttttaattcttctgattgatttcacttcttc-ccttttgattctttagattgat---tttgcact 121  Q
    |||||||||| |||||||||  |||| |||||| ||||| |||||| ||||||||||||||||| | ||| ||||||||    ||||||   ||||||||    
T  11335344 tgattcttctgattgattgcattgcacttctccccttttcattcttttgattgatttcacttctcctcctattgattctccttattgattgctttgcact 11335245  T
Q  122 tctcc-cttatggattcttatgattgattgaattgcacttctc 163  Q
    ||||| ||||| ||||||  ||||||||||  |||||||||||    
T  11335244 tctcctcttattgattctcctgattgattgctttgcacttctc 11335202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 11335384 - 11335312
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccct-tatggattcttatgattgattgaattgcacttctcc 164  Q
    ||||||||||||||| ||||||||   ||||||||||  ||| ||||||| |||||||||| |||||||||||||    
T  11335384 cccttttgattcttttgattgatta--cacttctccccctattgattcttctgattgattgcattgcacttctcc 11335312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9511908 - 9511952
Alignment:
Q  1 ttgcattgcacttctcctccccttatgattcttctaattgattgc 45  Q
    |||||||||||||||  ||||||| |||||||||| |||||||||    
T  9511908 ttgcattgcacttctgatccccttttgattcttctgattgattgc 9511952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 298
Target Start/End: Original strand, 26403200 - 26403301
Alignment:
Q  197 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatggttctctctttgagtggttga 296  Q
    |||| |||||||||||||||| ||||||| | |  ||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||| | |||||||    
T  26403200 attgattcttttgtatggctgcttctctccaccaattcttttgtttggtttggtttgacttggttcttctgtttagatggttctctatttaactggttga 26403299  T
Q  297 tg 298  Q
    ||    
T  26403300 tg 26403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 44338660 - 44338748
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  44338660 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 44338748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 3889163 - 3889238
Alignment:
Q  208 tgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgg-----gttcttatgtttagatggtt 278  Q
    ||||||| || ||||| ||| ||||||||||||||||||||||||| ||||     |||||||||||| |||||||    
T  3889163 tgtatggttgcttctccctaccggttcttttgtttggtttggtttggttggacttagttcttatgtttggatggtt 3889238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 10236744 - 10236822
Alignment:
Q  197 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttgattgggttcttatgtttagatg 275  Q
    |||||||||| | ||||| || ||||| ||| |||||||||||||||| || |||||| | ||||||| ||||| ||||    
T  10236744 attggttcttctatatggttgcttctccctagcggttcttttgtttggatttgtttgacttggttcttttgtttggatg 10236822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 26403166 - 26403228
Alignment:
Q  133 gattcttatgattgattgaattgcacttctccttattgatttttatgtttggttgctcctctc 195  Q
    ||||||| |||||||||| ||||||||||||| |||||||| || ||| ||| |||| |||||    
T  26403166 gattcttttgattgattgcattgcacttctccctattgattcttttgtatggctgcttctctc 26403228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 32041645 - 32041708
Alignment:
Q  191 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttggtttggtttga 254  Q
    ||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||| ||||||    
T  32041645 ctctctatttgttcttttgtatggttgattctctctaccggttcttttgtttggtttagtttga 32041708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 20242337 - 20242425
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20242337 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20242425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 20250823 - 20250735
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||||| ||||||||  |||||| |||| |||||||||||| |||||||  | ||||||||||||  ||||| |||||||||    
T  20250823 cccttttgattcttttgattgatt--gcacttatccccttatggattcttctgattgagagcattgcacttctctctattggtttttatgt 20250735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 38584078 - 38583910
Alignment:
Q  1 ttgcattgcacttctcctccccttatgattcttctaattgattgccctgcatttctcctc-ttttaattcttctgattg-atttcacttctt-ccctttt 97  Q
    |||||| ||||||||||  ||||| ||||| |||| | |||||||  |||| |||||| | |||| ||||||||||||| ||| || ||||  |||||||    
T  38584078 ttgcatcgcacttctcc--cccttttgatttttctgagtgattgcattgcacttctcccccttttgattcttctgattgcattgcatttctcgccctttt 38583981  T
Q  98 gattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattg 170  Q
    |||||||  ||||||||  |||||||||||   | ||||||| |||||||||| |||||||||||| ||||||    
T  38583980 gattcttctgattgatt--gcacttctccccctttgattcttctgattgattgtattgcacttctctttattg 38583910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 29409429 - 29409336
Alignment:
Q  91 cccttttgattctttagattgattttgcacttctcccttatggattcttatgattgattgaattgcacttctccttattgatttttatgtttggtt 186  Q
    |||| |||||||||  ||||||||  |||| |||||| | | ||||||| |||||||||| ||||||||||||| |||||||| || |||||||||    
T  29409429 ccctattgattcttctgattgatt--gcacgtctcccctgttgattcttctgattgattgcattgcacttctccctattgattcttctgtttggtt 29409336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 32290876 - 32290922
Alignment:
Q  258 ggttcttatgtttagatggttctctctttgagtggttgatgatgatg 304  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  32290876 ggttcttttgtttggatggttctctctttgattggttgatgatgatg 32290922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1173178 - 1173120
Alignment:
Q  180 tttggttgctcctctcaattggttcttttgtatggctgtttctctctatcggttcttttgt 240  Q
    |||||||||||||||  ||||||||||||||||| ||| ||||||||| | ||||||||||    
T  1173178 tttggttgctcctct--attggttcttttgtatgactgcttctctctacctgttcttttgt 1173120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 9168258 - 9168107
Alignment:
Q  60 cttttaattcttctgattg-atttcacttcttc-ccttttgattctttagattgattttgcacttctccctt-atggattcttatgattgattgaattgc 156  Q
    ||||| |||||||| |||| ||| ||||||| | |||||||||||||  ||| ||||  ||||||||||||| |||||||||| | |||||| | |||||    
T  9168258 cttttcattcttcttattgcattgcacttctcctccttttgattcttctgatcgatt--gcacttctccctttatggattcttctaattgatagcattgc 9168161  T
Q  157 acttctccttattgatttttatgtttggttgctcctctcaattggttcttttgt 210  Q
    |||||| | |||||||| |||||| ||| | || ||||| | ||||||||||||    
T  9168160 acttctacctattgattcttatgtatggctacttctctctactggttcttttgt 9168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 15629731 - 15629699
Alignment:
Q  272 gatggttctctctttgagtggttgatgatgatg 304  Q
    ||||||||||||||||| |||||||||||||||    
T  15629731 gatggttctctctttgattggttgatgatgatg 15629699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 42530806 - 42530868
Alignment:
Q  53 ttctcctcttttaattcttctgattgatttcacttctt-cccttttgattctttagattgatt 114  Q
    |||||| ||||| |||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  42530806 ttctccccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgatt 42530868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 50296009 - 50296047
Alignment:
Q  266 tgtttagatggttctctctttgagtggttgatgatgatg 304  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  50296009 tgtttggatggttctctctttgattggttgatgatgatg 50296047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 7259292 - 7259241
Alignment:
Q  197 attggttcttttgtatggctgtttctctctatcggttcttttgtttggtttgg 249  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||    
T  7259292 attggttcttatgtatggttgtttctc-ctatcggttcttttgtctggtttgg 7259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 14682 - 14629
Alignment:
Q  191 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 244  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  14682 ctctctattggttcttatgtatggctagttatctctaccggttcttttgtttgg 14629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 14749 - 14663
Alignment:
Q  93 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctccttattgatttttatgt 180  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||  ||||| || ||||||    
T  14749 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctctctattggttcttatgt 14663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 18984209 - 18984262
Alignment:
Q  191 ctctcaattggttcttttgtatggctgtttctctctatcggttcttttgtttgg 244  Q
    ||||| |||||||||| |||||||||  || |||||| ||||||||||||||||    
T  18984209 ctctctattggttcttgtgtatggctagttatctctaccggttcttttgtttgg 18984262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 18984142 - 18984211
Alignment:
Q  93 cttttgattctttagattgattttgcacttctccc-ttatggattcttatgattgattgaattgcacttctc 163  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||| || |||||||| | ||||||||||||    
T  18984142 cttttgattcttctgattgatt--gcacttctccccttatggatttttctgattgatagcattgcacttctc 18984211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University