View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5618-Insertion-3 (Length: 1025)

Name: NF5618-Insertion-3
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5618-Insertion-3
NF5618-Insertion-3
[»] chr3 (3 HSPs)
chr3 (557-964)||(8522250-8522666)
chr3 (491-534)||(8522207-8522250)
chr3 (453-492)||(8522147-8522186)
[»] chr5 (11 HSPs)
chr5 (508-964)||(42122586-42123043)
chr5 (573-946)||(42116886-42117276)
chr5 (573-962)||(42128044-42128435)
chr5 (693-964)||(34233320-34233594)
chr5 (582-964)||(34241093-34241472)
chr5 (670-842)||(41714175-41714347)
chr5 (704-944)||(41618206-41618448)
chr5 (704-944)||(41572567-41572809)
chr5 (452-492)||(42116804-42116844)
chr5 (907-964)||(41714085-41714143)
chr5 (593-647)||(34233634-34233688)
[»] chr4 (1 HSPs)
chr4 (544-964)||(11117276-11117706)
[»] chr6 (1 HSPs)
chr6 (593-964)||(25523561-25523943)
[»] chr2 (4 HSPs)
chr2 (642-946)||(11994947-11995256)
chr2 (582-946)||(12247617-12247983)
chr2 (691-807)||(32682381-32682497)
chr2 (723-851)||(9423378-9423506)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 557 - 964
Target Start/End: Original strand, 8522250 - 8522666
Alignment:
Q  557 tcaagcttgtgttaacagaaagtataaaacaaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctg------attctga 650  Q
    |||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||      |||||||    
T  8522250 tcaagcttgttttaacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaacaaaactacgacatttgcaccatctgattctgattctga 8522349  T
Q  651 ttcgtgattgaactttggttcctcatcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaa 750  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8522350 ttcgtgattgaactttggttcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaagccatctaggctttccaa 8522449  T
Q  751 ttaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgca 850  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||    
T  8522450 ttaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccactggtttccatccaaattcaaacttctcttcactgca 8522549  T
Q  851 aaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttgta 948  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  8522550 aaagttgttggctgaaggtgcagaatgttgttcaggtccacacatttttgacaagggtaatccacataaatccaagtttccttcataagaatcatttgta 8522649  T
Q  949 aa-gtattgaattgctt 964  Q
    || ||||||||||||||    
T  8522650 aatgtattgaattgctt 8522666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 491 - 534
Target Start/End: Original strand, 8522207 - 8522250
Alignment:
Q  491 cataaacttacaactgaaaatcaaactagctagatcaaaagagt 534  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  8522207 cataaacttacaactgaaaatcaaactagcaagatcaaaagagt 8522250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 453 - 492
Target Start/End: Original strand, 8522147 - 8522186
Alignment:
Q  453 aacttggaattttattatataacacatcttgtggcatgca 492  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  8522147 aacttggaattttattatataacacaacttgtggcatgca 8522186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 220; Significance: 1e-120; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 508 - 964
Target Start/End: Original strand, 42122586 - 42123043
Alignment:
Q  508 aaatcaaactagctagatcaaaagagtgacaagattatcacactcagaatcaagcttgtgttaa-cagaaagtataaaacaaacagacaaaagagaaaat 606  Q
    ||||||||||||||| ||   ||||||  ||||||| ||||||||| ||||||| || | |||| ||||||||| ||||| |||| |||| ||| ||| |    
T  42122586 aaatcaaactagctaaat---aagagtcgcaagattgtcacactcaaaatcaagattattttaaacagaaagtaaaaaaccaacacacaacagataaagt 42122682  T
Q  607 aattacaacaataaaactacgacatttgcaccatctgattctgattcgtgattgaactttggttcctcatcattcttgtccttcttttcactctcctctt 706  Q
    || |||||||||||||||| ||||||||||||||||||||||||||| || ||||||  ||   |||| ||| |||||| || ||| ||||||| |||||    
T  42122683 aactacaacaataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctctt 42122782  T
Q  707 aggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatcca 806  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  42122783 aggcggaccaccaaatatcatgacaagccatctaggctttccaattaaaaacatataatatccaatgcatattccaatcacaaatccacatccatatcca 42122882  T
Q  807 attgccacgggtttccatccaaatccaaatttctcttcattgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca--g 904  Q
    || ||||| |||||||||||||||| ||||||||||||| | ||| |||| ||||||||||||| | |||||||||||||||||||  |||||||||  |    
T  42122883 atcgccactggtttccatccaaatctaaatttctcttcactccaagagttcttggctgaaggtggagaatgttgttcaggtccacatttttttgacaagg 42122982  T
Q  905 gtaatccacataaatccaagtttccttcataggaatcatttgtaaa-gtattgaattgctt 964  Q
    |||||||||||||  |  | |||||||||||||||||||||||||| |||||||| |||||    
T  42122983 gtaatccacataaccctgaatttccttcataggaatcatttgtaaatgtattgaactgctt 42123043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 573 - 946
Target Start/End: Original strand, 42116886 - 42117276
Alignment:
Q  573 agaaagtataaaacaaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctg------------attctgattcgtgattg 660  Q
    |||||||| ||||| |||| |||| |||||||||||  ||||||||||||||| |||||||||||||||||            |||||||||| || |||    
T  42116886 agaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgattctgattcatggttg 42116985  T
Q  661 aactttggttcctcatcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacat 760  Q
     ||  ||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  42116986 taccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaatccatctaggctttccaattaaaaacat 42117085  T
Q  761 ataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaa---gttg 857  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||   ||||    
T  42117086 aaaatatccaatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctcttcactgcaaaagctgttg 42117185  T
Q  858 ttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttg 946  Q
    |||||||||  || | |||| |||||||||||||| || |||||||  || |||||||||||| ||||||||||||  |||||||||||||    
T  42117186 ttggctgaaattggagaatgatgttcaggtccacaaatctttgacaacggaaatccacataaacccaagtttcctttgtaggaatcatttg 42117276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 573 - 962
Target Start/End: Original strand, 42128044 - 42128435
Alignment:
Q  573 agaaagtataaaacaaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctgattctgattcgtgattgaactttggttcc 672  Q
    |||||||| ||||| || | |||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| || ||||||  ||   ||    
T  42128044 agaaagtaaaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccc 42128143  T
Q  673 tcatcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaat 772  Q
    || ||| |||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  42128144 tcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaagccatctagacttttcaattaaaaacatataatatccaat 42128243  T
Q  773 gcctattccaatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaagttgttggc--tgaa-ggt 869  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||| | ||| |||||||| |   |||  ||    
T  42128244 gcctattccaatcacaaatccacatccatatccaatcgccactggtttccatccaaatctaaatttctcttcactccaagagttgttgtcaaagaattgt 42128343  T
Q  870 gcaaaatgttgttcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttgtaaa-gtattgaattgc 962  Q
    | ||    |||||||||||||||  | |||||||  || |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  42128344 ggaa----ttgttcaggtccacaattctttgacaagggaaatccacataaccccaagtttccttcataggaatcatttgtaaatgtattgaattgc 42128435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 693 - 964
Target Start/End: Complemental strand, 34233594 - 34233320
Alignment:
Q  693 ttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatc 792  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  34233594 ttcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattccaaacacaaatc 34233495  T
Q  793 cacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccaca 892  Q
    ||||||| || ||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||| | |||||||||| ||||||||    
T  34233494 cacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgttccggtccaca 34233395  T
Q  893 catttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttgtaaa-gtattgaattgctt 964  Q
      | |||||||  ||||||||||||||  ||||||| |||| ||| |||||||||||||| ||||||||||||||    
T  34233394 tttctttgacaagggtaatccacataaccccaagttccctttataagaatcatttgtaaatgtattgaattgctt 34233320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 582 - 964
Target Start/End: Complemental strand, 34241472 - 34241093
Alignment:
Q  582 aaaacaaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctgattctgattcgtgattgaactttggttcctcatcattc 681  Q
    ||||| |||| |||| |||||||||||  | || |||||||||| |||||||||||||||||      |||| || ||| ||  | ||| ||| ||| |     
T  34241472 aaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatctg------attcatggttggaccattgtttctcctcactt 34241379  T
Q  682 ttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattcc 781  Q
     ||| || || |||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  34241378 atgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaaaccatctaggctttccaattaaaaacatataatatccaaggcctattcc 34241279  T
Q  782 aatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaagttgttggctgaaggtgcaaaatgttgt 881  Q
    || ||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||| | ||||||||    
T  34241278 aaacacaaatccacatccataaccaattgccactggtttccatccaaagccaaatttctcttcactccaaaagttgttggctgaaggtggagaatgttgt 34241179  T
Q  882 tcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttgtaaa-gtattgaattgctt 964  Q
    || ||||||||  | |||||||  ||||||||||||||  ||||||| |||| ||| |||||||||||||| ||||||||||||||    
T  34241178 tccggtccacatttctttgacaagggtaatccacataaccccaagttccctttataagaatcatttgtaaatgtattgaattgctt 34241093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 670 - 842
Target Start/End: Complemental strand, 41714347 - 41714175
Alignment:
Q  670 tcctcatcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatcc 769  Q
    ||||| |||||||||| || | | ||||| | |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||| ||    
T  41714347 tcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaagccatctaggctttccgatcaaaaacatgtaataccc 41714248  T
Q  770 aatgcctattccaatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctct 842  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  41714247 aatgcctattccaatcacaaatccacatccatatccaattgccactgctttccatccaaatccaaatttctct 41714175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 704 - 944
Target Start/End: Complemental strand, 41618448 - 41618206
Alignment:
Q  704 cttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtat 803  Q
    |||||| ||||| ||||  ||||| |||||||||||||||||||||||||| |||| | || |||||| |||||||||||| || | ||||||||| |||    
T  41618448 cttaggttgacctccaaccatcatcacaagccatctaggctttccaattaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41618349  T
Q  804 ccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca 903  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | |||| |||||||| || | | | | |||||||||||||| ||||  | |||||||    
T  41618348 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcacatttctttgaca 41618249  T
Q  904 --ggtaatccacataaatccaagtttccttcataggaatcatt 944  Q
      || ||||| |||||  |||||||||||||||| || |||||    
T  41618248 agggaaatccgcataatcccaagtttccttcatatgagtcatt 41618206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 704 - 944
Target Start/End: Complemental strand, 41572809 - 41572567
Alignment:
Q  704 cttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtat 803  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||  |||| |||| | || |||||| |||||||||||| || | ||||||||| |||    
T  41572809 cttaggttgacctccaaccatcatcacaagccatctaggctttccggttaacaacacaaaacatccaaggcctattccaataaccattccacatccatat 41572710  T
Q  804 ccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca 903  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | |||| |||||||| || | | | | |||||||||||||| ||||  | |||||||    
T  41572709 ccaatagccactggtttccatccaaatccaaatttctcttcactccaaaggttgttgggtggaagcggagaatgttgttcaggttcacatttctttgaca 41572610  T
Q  904 --ggtaatccacataaatccaagtttccttcataggaatcatt 944  Q
      || ||||| |||||  |||||||||||||||| || |||||    
T  41572609 agggaaatccgcataatcccaagtttccttcatatgagtcatt 41572567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 42116804 - 42116844
Alignment:
Q  452 aaacttggaattttattatataacacatcttgtggcatgca 492  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42116804 aaacttggaattttattatataacacatcttgtggcatgca 42116844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 907 - 964
Target Start/End: Complemental strand, 41714143 - 41714085
Alignment:
Q  907 aatccacataaatccaagtttccttcataggaatcatttgtaaa-gtattgaattgctt 964  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||| |||||    
T  41714143 aatccacataaccccaagtttccttcataggaatcatttgtaaatgtattgaactgctt 41714085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 647
Target Start/End: Complemental strand, 34233688 - 34233634
Alignment:
Q  593 acaaaagagaaaataattacaacaataaaactacgacatttgcaccatctgattc 647  Q
    |||| |||||||||||  | || |||||||||| |||||||||||||||||||||    
T  34233688 acaatagagaaaataaccagaataataaaactatgacatttgcaccatctgattc 34233634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 544 - 964
Target Start/End: Original strand, 11117276 - 11117706
Alignment:
Q  544 atcacactcagaatcaagcttgtgttaa-cagaaagtataaaacaaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatct 642  Q
    |||||||||| |||||||||| | |||| ||||||||| ||||| ||||  |||  |||||| ||| ||| |||||||||||| ||||||||||||||||    
T  11117276 atcacactcaaaatcaagcttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatct 11117375  T
Q  643 gattctgattcgtgattgaactttggttcctcatcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctagg 742  Q
    ||||||||||| || ||||||  ||    ||| ||| |||||| || ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  11117376 gattctgattcatgtttgaaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaagccatctagg 11117475  T
Q  743 ctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctct 842  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||    
T  11117476 ctttccaattaaaaacatataatatccaatgcttattccaatcacaaatccacatgcatatccaattgccactgctttccatccaaatccaaatttctct 11117575  T
Q  843 tcatt------gcaaaagttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcat 934  Q
    |||||      | || |||||||||||||||||| | |||||||||||||||||||  | |||||||  ||||||||||||||  |  | ||||||||||    
T  11117576 tcattccaagaggaagagttgttggctgaaggtggagaatgttgttcaggtccacatttctttgacaagggtaatccacataaccctgaatttccttcat 11117675  T
Q  935 aggaatcatttgtaaa-gtattgaattgctt 964  Q
    |||||||||||||||| ||||||||||||||    
T  11117676 aggaatcatttgtaaatgtattgaattgctt 11117706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 593 - 964
Target Start/End: Complemental strand, 25523943 - 25523561
Alignment:
Q  593 acaaaagagaaaataattacaacaataaaactacgacatttgcaccatctgattctgattcgtgattga-------actttggttcctcatcattcttgt 685  Q
    |||||||||||||||| || ||||||||| ||| |||||||||| |||||||||||||||| ||||| |       ||  || |||||| ||||||||||    
T  25523943 acaaaagagaaaataactaaaacaataaa-ctatgacatttgcatcatctgattctgattc-tgattcatggctgtaccatgattcctcctcattcttgt 25523846  T
Q  686 ccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatc 785  Q
    |||| |||||||  | |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  25523845 cctttttttcacctttctcttaggctgaccgccaaatatcatcacaagccatctaggctttccaactaaaaacatacaatatccaatgcctattccaatc 25523746  T
Q  786 acaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaag---ttgttggctgaaggtgcaaaatgttgtt 882  Q
    | |||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||| | ||||||   ||||||| |||||||| | |||||||||    
T  25523745 agaaatccacatccatatccaattaccaccggtatccatccaaatccaaatttctcttcactccaaaagtttttgttgggtgaaggtggagaatgttgtt 25523646  T
Q  883 caggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttgtaaa-gtattgaattgctt 964  Q
    || |||||||  | |||||||  || |||||||||||  ||||||||||||||||||||||||||||||| || |||||||||||    
T  25523645 caagtccacatctctttgacaagggaaatccacataaccccaagtttccttcataggaatcatttgtaaatgtgttgaattgctt 25523561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 642 - 946
Target Start/End: Complemental strand, 11995256 - 11994947
Alignment:
Q  642 tgattctgattcgtgattgaactttggttcctcatcattcttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctag 741  Q
    |||||||||||| || ||| ||  ||||||||  ||| |||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  11995256 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctag 11995157  T
Q  742 gctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctc 841  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  11995156 gctttccaattaaaaacatacaatatccgaggcctattccaatcacaaatccacatccatatccaattgccactggtttccatccaaatccaaatttctc 11995057  T
Q  842 ttcattgcaaaa---gttgttggctgaaggtgcaaaatgttgttcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcatag 936  Q
    |||| |  ||||   |||||||| |||||||| | || ||||||||||||| ||| | |||||||  || ||| ||||||| |||||||||||| ||||     
T  11995056 ttcactcgaaaagctgttgttgggtgaaggtggagaacgttgttcaggtccgcacttctttgacaagggaaattcacataactccaagtttcctacatat 11994957  T
Q  937 gaatcatttg 946  Q
    ||||||||||    
T  11994956 gaatcatttg 11994947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 582 - 946
Target Start/End: Original strand, 12247617 - 12247983
Alignment:
Q  582 aaaacaaacagacaaaagagaaaataattacaacaataaaactacgacatttgcaccatctgattctgattcgtgattgaactttggttcctcatcattc 681  Q
    ||||| |||| |||| |||||||||||  ||||||| |   ||||||||||  |||||| |||||||||||| || ||| ||  ||||||||  ||| ||    
T  12247617 aaaactaacacacaatagagaaaataaccacaacaaga---ctacgacattgccaccatttgattctgattcatggttgcaccatggttcctactcactc 12247713  T
Q  682 ttgtccttcttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattcc 781  Q
    |||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||    
T  12247714 ttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaagccatctaggctttccaattaaaaacatacaatatccgaggcctattcc 12247813  T
Q  782 aatcacaaatccacatccgtatccaattgccacgggtttccatccaaatccaaatttctcttcattgcaaaa---gttgttggctgaaggtgcaaaatgt 878  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||  | |||||   ||||||   |||||||  | ||| |    
T  12247814 aatcacaaatccacatccatatccaattgccaccggtttccatccaaatccaaatttcgcgtcgctccaaaagctgttgttaagtgaaggttgagaatat 12247913  T
Q  879 tgttcaggtccacacatttttgaca--ggtaatccacataaatccaagtttccttcataggaatcatttg 946  Q
    ||||||||||||||| | |||||||  || ||||||||||| |||||||||||| |||| ||||||||||    
T  12247914 tgttcaggtccacacttctttgacaagggaaatccacataactccaagtttcctacatatgaatcatttg 12247983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 691 - 807
Target Start/End: Complemental strand, 32682497 - 32682381
Alignment:
Q  691 ttttcactctcctcttaggctgaccaccaaatatcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaa 790  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  32682497 ttttcactcttctcttaggatgaccaccaattatcatcacaagccatctaggctttccaattaaaaacataaagtatccaatgcctattccaatcacaaa 32682398  T
Q  791 tccacatccgtatccaa 807  Q
    ||||||||| |||||||    
T  32682397 tccacatccatatccaa 32682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 723 - 851
Target Start/End: Complemental strand, 9423506 - 9423378
Alignment:
Q  723 atcataacaagccatctaggctttccaattaaaaacatataatatccaatgcctattccaatcacaaatccacatccgtatccaattgccacgggtttcc 822  Q
    ||||| ||| |||||||||||||||||||||| | |||| || |||||| |||| |||||| ||| | ||||||||| |||||||||||||| | |||||    
T  9423506 atcatcacaggccatctaggctttccaattaacagcatacaacatccaaggccttttccaagcaccattccacatccatatccaattgccactgatttcc 9423407  T
Q  823 atccaaatccaaatttctcttcattgcaa 851  Q
    |||||||||||||||||||||||||||||    
T  9423406 atccaaatccaaatttctcttcattgcaa 9423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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