View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5618-Insertion-4 (Length: 940)
Name: NF5618-Insertion-4
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 833; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 45 - 940
Target Start/End: Original strand, 49653887 - 49654781
Alignment:
| Q |
45 |
acacaacacatacatgtgattaaattgaaatactacttctattttttaaatgcggtcagtgacagtgtttgtgttgcgtcttgtattcgtgtttctgtat |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49653887 |
acacaacacatacatgtgattaaattgaaatactactt--attttttaaatgcggtcagtgacagtgtttgtgttgtgtcttgtattcgtgtttctgtat |
49653984 |
T |
|
| Q |
145 |
gtgattcttattaattaaccatttttgtgttgttacggtgacaaaattttggggtgtttcataacatttgcaatgcaggagtttttacaacaacaatcga |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49653985 |
ttgattcttattaattaaccatttttgtgttgttacggtgacaaaattttggggtgtttcataacatttgcaatgcaggagtttttacaacaacaatcga |
49654084 |
T |
|
| Q |
245 |
tccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggttttgccggag |
344 |
Q |
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| T |
49654085 |
tccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggttttgccggag |
49654184 |
T |
|
| Q |
345 |
aatcttccagggaaagtaaaggactccaacaaagctaaaaacaacaataagagtgaacnnnnnnnccaagaaactcagcaaaagaaagaccattgttctg |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49654185 |
aatcttccagggaaagtaaaggactccaacaaagctaaaaacaacaataagagtgaacaaaaaaaccaagaaactcagcaaaagaaagaccattgttctg |
49654284 |
T |
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| Q |
445 |
caaatactgaatccaacctcaactctgccaaagacaagggaattgaaa-tgctgaggagtgtaacggtaaaagcaagagtactaacacaaaaaccagtgc |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654285 |
caaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaacacaaaaaccagtgc |
49654384 |
T |
|
| Q |
544 |
tggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaggagtggtcaaagtggcggaggagattctggtaagaagaagatgaag |
643 |
Q |
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| T |
49654385 |
tggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaagagtggtcaaagtggcggaggagattctggtaagaagaagatgaag |
49654484 |
T |
|
| Q |
644 |
aaaactcagagtggaactggaagcaatgggttgagttcagcatctactggtgcacctgcagacactggagcagaattccagtgtccaggtcaggttgtgg |
743 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49654485 |
aaaactcagagtggaactggaagcaatgggttgagttcagcatctaccggtgcacctgcacacactggagcagaattccagtgtccaggtcaggttgtgg |
49654584 |
T |
|
| Q |
744 |
ggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatg |
843 |
Q |
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| T |
49654585 |
ggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatg |
49654684 |
T |
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| Q |
844 |
tcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctaca |
940 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654685 |
tcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctaca |
49654781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 6224678 - 6224763
Alignment:
| Q |
278 |
tgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggttttgccggagaatcttccagggaaagtaa |
363 |
Q |
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| T |
6224678 |
tgttgctcttgagactttgataaggaaacttgccaaagctggaaatcacgccgaggttttgccagagaatcttcctgggaaagtaa |
6224763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 775 - 940
Target Start/End: Original strand, 16486263 - 16486428
Alignment:
| Q |
775 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
874 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
875 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctaca |
940 |
Q |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctaca |
16486428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 775 - 940
Target Start/End: Complemental strand, 21816647 - 21816482
Alignment:
| Q |
775 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
874 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
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| Q |
875 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctaca |
940 |
Q |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctaca |
21816482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 777
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
746 |
caagtgaatctcagccctacacgtcagcaatc |
777 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 350
Target Start/End: Complemental strand, 14381964 - 14381849
Alignment:
| Q |
235 |
caacaatcgatccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggt |
334 |
Q |
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||||||| ||| ||||||| | ||||||||||| || |||||||||| | | ||||| || ||||||| || | |||||||||||| |||| ||| | |
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| T |
14381964 |
caacaattgattcacaacaacaaaaagtaacagtaactggaaatgttggtgttgagacccttttaaggaagctggtcaaagctggaaagtacgctgagat |
14381865 |
T |
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| Q |
335 |
tttgccggagaatctt |
350 |
Q |
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|| ||||||||||||| |
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| T |
14381864 |
ttggccggagaatctt |
14381849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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