View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5618-Insertion-5 (Length: 713)
Name: NF5618-Insertion-5
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Original strand, 5640063 - 5640768
Alignment:
| Q |
8 |
aaataaacataaaatatgatgacattaaattcatatgcaaatatacatacttagaggaagtcccccgaacaaatttcatagcataattcgggacctacac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640063 |
aaataaacataaaatatgatgacattaaattcatatgcaaatatacatacttagaggaagtcccccgaacaaatttcatagcataattcgggacctacac |
5640162 |
T |
|
| Q |
108 |
nnnnnnnnngccttggtcaacaaagaattaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacac |
207 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640163 |
aaaaaaaaagcctttgtcaacaaagaactaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacac |
5640262 |
T |
|
| Q |
208 |
tctttcaacagaggggtcccactccacnnnnnnnnctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaaggcaagaatgcacaatt |
307 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640263 |
tctttcaacagaggggtcccactccacttttttttctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaaggcaagaatgcacaatt |
5640362 |
T |
|
| Q |
308 |
aaagtttacagggagcaacaaagataaaataacagaacataatatcaattcaagatctggaaccttcttcttcggaatgaggcaaactctctcatagtca |
407 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640363 |
aaaatttacagggagcaacaaagataaaataacagaacataatatcaattcaagatcaggaaccttcttcttcggaatgaggcaaactctctcatagtca |
5640462 |
T |
|
| Q |
408 |
tcgttatttaacagatatggcctgtgatcatacagcagaccacttggtgcactttcagagtcagctgtgtaattcaccatctctagagaatagaaaacac |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5640463 |
tcgttatttaacagatatggcctgtgatcatacagcagaccacttggtgcactttcagagtcagctgtgtaattcaccatctctagagaatagaaaacac |
5640562 |
T |
|
| Q |
508 |
agattcaataatttgtgttaataatgaaggaagcaagacaaattttctaaacatgtgaaatgtaacaggctgtgaccacatacaaaattttagttataga |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
5640563 |
agattcaataatttgtgttaataatgaaggaagcaagacaatttttctaaacatgtgaaatgtaacaggcagtaaccacatacaaaattttagttataga |
5640662 |
T |
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| Q |
608 |
aaaagagcaaagacagacagcaaggacattttagctgataaatatgaacactttgaaataagaaccattcgttcatnnnnnnncaacagacatctttcat |
707 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
5640663 |
aaaagagcaaagacagatagcaaggacattttagctgataaatatgaacactttgaaatatgaaccattcgttcataaaaaaacaacagacatctttcat |
5640762 |
T |
|
| Q |
708 |
gcaaag |
713 |
Q |
| |
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|||||| |
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| T |
5640763 |
gcaaag |
5640768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 8 - 574
Target Start/End: Original strand, 1338175 - 1338744
Alignment:
| Q |
8 |
aaataaacataaaatatgatgacattaaattcatatgcaaatatacatacttagaggaagtcccccgaacaaatttcatagcataattcgggacctacac |
107 |
Q |
| |
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|||||||||||||||||||||||| ||||| || | || |||||||||||||||||| ||||| ||||||||| |||||||||||| || ||||| |
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| T |
1338175 |
aaataaacataaaatatgatgacaaaaaattgatgtacatatatacatacttagaggaggtcccgcgaacaaatgtcatagcataatctggaacctatgt |
1338274 |
T |
|
| Q |
108 |
nnnnnnnnngccttg--gtcaacaaagaattaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatac |
205 |
Q |
| |
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||| |||||||||||| ||||||||||||||||| || ||||| ||| | | |||||||||||| |||||||||||||| |||||| |
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| T |
1338275 |
ggaaaaaaaaggttgtggtcaacaaagaaataacttcaaaataaatgtgtccctaagacaagacaggattagtaccaagggcttcccagattttagatac |
1338374 |
T |
|
| Q |
206 |
actctttcaacagaggggtcccactccacnnnnnnnnctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaaggcaagaatgcacaa |
305 |
Q |
| |
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||||||| || ||| |||||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| | |||||| |
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| T |
1338375 |
actcttttaaaagacgggtcccattccaccttattttctttaacaagaacacccttgaggtccctgaagtttgccccctaaaa-aggcaagcaagcacaa |
1338473 |
T |
|
| Q |
306 |
ttaaagtttacagggagcaacaaagataaaataacagaacataatatcaattcaagatctggaaccttcttcttcggaatgaggcaaactctctcatagt |
405 |
Q |
| |
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||| | |||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||| |||||||||||||||||| |
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| T |
1338474 |
ttagaatttacatggagcaacaaagataaaataacagtacataatatcaattaaagatagggaaccttctcctttggaatgtggcaaactctctcatagt |
1338573 |
T |
|
| Q |
406 |
catcgttatttaacagatatggcctgtgatcatacagcagaccacttggtgcactttcagagtcagctgtgtaattcaccatctctagagaatagaaaac |
505 |
Q |
| |
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||||| ||||||| | ||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||||| |
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| T |
1338574 |
catcggtatttaatttcaaaggcctatgatcatacagcataccacttggtgcactttgagagtcagccaaataattcaccatctctggag--tagaaaac |
1338671 |
T |
|
| Q |
506 |
a-cagattcaa---taatttgtgttaataatgaaggaagcaagacaaattttctaaacatgtgaaatgtaaca |
574 |
Q |
| |
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| |||||||| | || |||||| ||||||||||||||||||||||||||| || |||| |||||||| |
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| T |
1338672 |
ataagattcaaaaccagttcaggttaatgatgaaggaagcaagacaaattttctaaccacgtgacatgtaaca |
1338744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 121 - 610
Target Start/End: Original strand, 31940103 - 31940599
Alignment:
| Q |
121 |
tggtcaacaaagaattaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacactctttcaacagag |
220 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || ||||| ||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
31940103 |
tggtcaacaaagaactaacttcaaaataaatgtgtccctaagacaagacaagattagtaccaaaggctttccagattttagatacactctttcaacagag |
31940202 |
T |
|
| Q |
221 |
gggtcccactccacnnnnnnnnctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaaggcaagaatgcacaattaaagtttacaggg |
320 |
Q |
| |
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|||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||| |||||| | |
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| T |
31940203 |
gggtcccattccacctttttttctttaacaagcactcccttgaggtccctgaagtttgccccctaaaaa-ggcaagcaagcacaattaaaatttacatag |
31940301 |
T |
|
| Q |
321 |
agcaacaaagataaaataacagaac---ataatatcaattcaagatctggaaccttcttcttcggaatgaggcaaactctctcatagtcatcgttattta |
417 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
31940302 |
agcaacaaagataaaatgacagtactacataatatcaattcaagatacggtaccttcttctttggaatgtggcaaactctctcatagtcatcggtattta |
31940401 |
T |
|
| Q |
418 |
acagatatggcctgtgatcatacagcagaccacttggtgcactttcagagtcagctgtgtaattcaccatctctagagaatagaaaacac-agattcaat |
516 |
Q |
| |
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| | ||||||||||||||||||| ||||||||||||||| | | ||||||| | |||||| |||||||| ||| |||||||||| |||||||| |
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| T |
31940402 |
atttcaaaggcctgtgatcatacagcataccacttggtgcactatgatagtcagcagaataattcgccatctctggag--tagaaaacacaagattcaac |
31940499 |
T |
|
| Q |
517 |
a--atttgtg-ttaataatgaaggaagcaagacaaattttctaaacatgtgaaatgt---aacaggctgtgaccacatacaaaattttagttatagaaaa |
610 |
Q |
| |
|
| | || | ||| | ||||||||||||||||| ||||||||| ||| ||| |||| |||| || |||||||||||| |||| |||||||| |||| |
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|
| T |
31940500 |
accagttcagtttactgatgaaggaagcaagacagattttctaaccatatgacatgtaacaacatgcaatgaccacatacacaattctagttataaaaaa |
31940599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 31939988 - 31940074
Alignment:
| Q |
8 |
aaataaacataaaatatgatgacattaaattcatatgcaaatatacatacttagaggaagtcccccgaacaaatttcatagcataat |
94 |
Q |
| |
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||||| ||||||||||||||||| | |||| || | || ||||||||||||||| || ||||| ||||||||| |||| ||||||| |
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|
| T |
31939988 |
aaatagacataaaatatgatgacctaaaatagatgtacatatatacatacttagaagaggtcccacgaacaaatgtcattgcataat |
31940074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 13536225 - 13536308
Alignment:
| Q |
8 |
aaataaacataaaatatgatgacattaaattcatatgcaaatatacatacttagaggaagtcccccgaacaaatttcatagcataat |
94 |
Q |
| |
|
||||||||| |||||||| |||||| | | || |||| |||||||||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
13536225 |
aaataaacagaaaatatgttgacatgata---atgtgcatatatacatacttagaggaagtcccacgaacaaatgacatggcataat |
13536308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 13536362 - 13536453
Alignment:
| Q |
143 |
aaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacactctttcaacagaggggtcccactccac |
234 |
Q |
| |
|
|||||||||| || ||||| ||||| |||||| |||||||||||| |||||||| || | ||||||||||||||||||||| ||||| |
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|
| T |
13536362 |
aaaataaatgtgtccctaagacaacaagagattaataccaaaggcttgccagattttagtaattgtctttcaacagaggggtcccattccac |
13536453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 121 - 563
Target Start/End: Original strand, 9390456 - 9390882
Alignment:
| Q |
121 |
tggtcaacaaagaattaacttcaaaataaatgcatcgctaaggcaacagaagattagtaccaaaggcttcccagatttcagatacactctttcaacagag |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || | ||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
9390456 |
tggtcaacaaagaactaacttcaaaataaatgtgtccc-aagacaagtcaagattagtaccaaaggctttccagattttagatacactctttcaactgag |
9390554 |
T |
|
| Q |
221 |
gggtcccactccacnnnnnnnnctttcacaagcacaccctttaggtccctgaagtttgccccctaaaaaaggcaagaatgcacaattaaagtttacaggg |
320 |
Q |
| |
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|||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||| |||||| |
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| T |
9390555 |
gggtcccattccaccttgttttctttaacaagcactcccttgaggtccctgaagtttgccccctaaaaa-ggcaagcaagcacaattaaaatttacat-- |
9390651 |
T |
|
| Q |
321 |
agcaacaaagataaaataacagaacataatatcaattcaagatctggaaccttcttcttcggaatgaggcaaactctctcatagtcatcgttatttaaca |
420 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||| ||||||| |
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| T |
9390652 |
--------------aataacagtacataatatcaattcaagatatgataccttcttctttggaatgtggcaaactctctcatagtcatcggtatttaatt |
9390737 |
T |
|
| Q |
421 |
gatatggcctgtgatcatacagcagaccacttggtgcactttcagagtcagctgtgtaattcaccatctctagagaatagaaaacac-agattcaata-- |
517 |
Q |
| |
|
| || |||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||| ||| |||||||||| |||||||| | |
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| T |
9390738 |
tcaaaggtctgtgatcatacagcataccacttggtgcactttgagagtcagcagaataattcaccatctctggag--tagaaaacacaagattcaacacc |
9390835 |
T |
|
| Q |
518 |
atttgtg-ttaataatgaaggaagcaagacaaattttctaaacatgt |
563 |
Q |
| |
|
| || | ||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
9390836 |
agttcagcttaatgatgaaggaagcaagacagattttctaaccatgt |
9390882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 9390340 - 9390427
Alignment:
| Q |
7 |
aaaataaacataaaatatgatgacattaaattcatatgcaaatatacatacttagaggaagtcccccgaacaaatttcatagcataat |
94 |
Q |
| |
|
|||||| ||||||||||||||||| | |||| || | || || |||||||||||| || ||||| ||||||||| |||| ||||||| |
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| T |
9390340 |
aaaatagacataaaatatgatgacctaaaatagatgtacatatgtacatacttagaagaggtcccacgaacaaatgtcattgcataat |
9390427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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