View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5618-Insertion-6 (Length: 292)
Name: NF5618-Insertion-6
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 1347020 - 1346736
Alignment:
| Q |
8 |
gtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattc |
107 |
Q |
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| T |
1347020 |
gtttttctgttatattattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttgcaaaattcaatcagctcaaattc |
1346921 |
T |
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| Q |
108 |
ttgttttaagccttgcaacctttttcgttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctttgttgttatagcatggaaactct |
207 |
Q |
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| T |
1346920 |
ttgttttaagccttgtaacctttttcgttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctttgttgttatagcatggaaactct |
1346821 |
T |
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| Q |
208 |
tttcaaaatctagtagctcctcgtattgacttattaaaaacaaagctttttagtttgggagtggattagcagaatctttgtttgg |
292 |
Q |
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| T |
1346820 |
tttcaaaatctagtagctcctcatattgacttattaaaaacaaagctttttagtttgggagtggattagcagaatctttgtttgg |
1346736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 19653021 - 19652915
Alignment:
| Q |
151 |
tcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaaca |
249 |
Q |
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| T |
19653021 |
tcatatgttttgtgcataattttccaagtttcatttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaaca |
19652922 |
T |
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| Q |
250 |
aagcttt |
256 |
Q |
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| T |
19652921 |
aagcttt |
19652915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 19807813 - 19807927
Alignment:
| Q |
39 |
gaccaacgtatccattcgtaaaaaatcatga---atactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgt |
135 |
Q |
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| T |
19807813 |
gaccaacttgtccattcgtgaaaaataatgacaaatactttcatctttgaaatgttcaatcaactcaaattgtctttttaagccacgcaaccttgtccgt |
19807912 |
T |
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| Q |
136 |
taaattggatctgct |
150 |
Q |
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| T |
19807913 |
tatgttggatctgct |
19807927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 40036781 - 40036960
Alignment:
| Q |
22 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagcctt |
121 |
Q |
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| T |
40036781 |
ttattcttggttttattgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtctt |
40036880 |
T |
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| Q |
122 |
gcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgttatagcatgg |
200 |
Q |
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| T |
40036881 |
gcaacctttttcgttaaattggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatgg |
40036960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 40031437 - 40031623
Alignment:
| Q |
22 |
ttattcttcgcttcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagcctt |
121 |
Q |
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| T |
40031437 |
ttattcttcggtttattgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtctt |
40031536 |
T |
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| Q |
122 |
gcaacctttttcgttaaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgt--tatagcatggaaact |
205 |
Q |
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| T |
40031537 |
gcaacctttttctttaaactggatttgctccatgtgttttgagcataatttcccaagcttgctttgctattatatagcatggaaact |
40031623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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