View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5618_high_4 (Length: 346)
Name: NF5618_high_4
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 4412235 - 4411914
Alignment:
| Q |
6 |
gtcgaagaatatactaaataaccaaacacaaatgaattttagaactttttaaatttgaacagatctatttcaaaataaaccaaactgataaattgtgatc |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4412235 |
gtcgaaaaatatactaaataaccaaacacaaatgaattttagaactttttaaatttgaaccgatctattttaaaataaaccaaactgataaattatgatc |
4412136 |
T |
|
| Q |
106 |
tgaactgaaccaaatcgagcaatttcagtttagttcgatttggcttgattgaacactacggttgaannnnnnnnnnnnnnnacccacccaacttaaaaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
4412135 |
tgaactgaaccaaatcgagcaatttcagtttagttcgatttggcttgattgaacactacggttgaattttttggtttttttacccacccaactt-aaaaa |
4412037 |
T |
|
| Q |
206 |
tatgctcattcccctcaacttatttaaaagtcttccaa----nnnnnnnnnggagtacaagagagctttagcccaaaagaaagaaaacttaatgcttaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4412036 |
tatgctcattcccctcaacttatttaaaagtcttccaatttttttttttttggattacaagagagctttagcccaaaagaaagaaaacttaatgcttaat |
4411937 |
T |
|
| Q |
302 |
taaacgaggtgttgcaataccaa |
324 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4411936 |
taaacgaggtgttgcaataccaa |
4411914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 4085429 - 4085500
Alignment:
| Q |
254 |
gagtacaagagagctttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaac |
325 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
4085429 |
gagtacaagagggccttagcccaaaagaaagaaaacttaacgcctaattaaacgaggtgttgcaacaccaac |
4085500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 30022419 - 30022489
Alignment:
| Q |
255 |
agtacaagagagctttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaac |
325 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
30022419 |
agtacaagagatctttagcccaaaagaaaggaaacttaacacttaattaaactaggtgttgcaacaccaac |
30022489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 3575059 - 3575115
Alignment:
| Q |
269 |
ttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaac |
325 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
3575059 |
ttagcctaaaagaaagaaaacttagcgtctaattaaacgaggtgttgcaacaccaac |
3575115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University