View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5618_high_6 (Length: 250)

Name: NF5618_high_6
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5618_high_6
NF5618_high_6
[»] chr1 (2 HSPs)
chr1 (108-250)||(35577618-35577760)
chr1 (19-86)||(35563296-35563363)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 35577618 - 35577760
Alignment:
Q  108 tatctattatgcgatacattttctattcatcaatgaatccataatcgacaacattatcaatgacaacattttcaaccgaattcctctcacacacattaaa 207  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35577618 tatccattatgcgatacattttctgttcatcaatgaatccataatcgacaacattatcaatgacaacattttcaaccgaattcctctcacacacgttaaa 35577717  T
Q  208 cttcagaatccacacttcacgccattcaaaacccaacacaatc 250  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  35577718 cttcagaatccacacttcaagccattcaaaacccaacacaatc 35577760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 35563296 - 35563363
Alignment:
Q  19 ataaattaaaacaaggtctgaattcatttgtgttggattgaattcatgcccagctgcaccaactagtt 86  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  35563296 ataaaataaaacaaggtctgaattcatttgtgttggattgaattcatgcccagctgcattaactagtt 35563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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