View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5618_low_2 (Length: 584)
Name: NF5618_low_2
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 49653872 - 49653305
Alignment:
| Q |
18 |
taacatgtgttggacaccatacacgtcttca------ggtgtcgagggttacattgtacttattagagcaccagccaccaaaccatacagtgttttagtg |
111 |
Q |
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| T |
49653872 |
taacacgtgttggacaccatacacgtcttcaatctaaggtgtcgagtgctacattgtacttattagagcaccagccaccaaaccatacagtgttttagtg |
49653773 |
T |
|
| Q |
112 |
gtaagaaaagggtaaatggaaatgacagtgattttgggtttagcaaagtaaga---tttaagacttgtaatctttccatgcatgaaatgaaaaagaactg |
208 |
Q |
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| T |
49653772 |
gtaagaaaagggtaaatggaaatgacagtgattttgggtttagcaaagtaagaagatttaagacttgtaatctttccatgcatgaaatgaaaaagaactg |
49653673 |
T |
|
| Q |
209 |
aatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtgtatag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49653672 |
aatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatag |
49653573 |
T |
|
| Q |
309 |
aaaccttcaagaaccatgtctgtgaaacaaaaccaactttagcttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaa |
408 |
Q |
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| T |
49653572 |
aaaccttcaagaaccatgtctgtgaaacaaaaccaagtttagcttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaa |
49653473 |
T |
|
| Q |
409 |
gtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatga |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49653472 |
gtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatga |
49653373 |
T |
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| Q |
509 |
aagtgagatgaggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
576 |
Q |
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| T |
49653372 |
aagtgagaagaggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
49653305 |
T |
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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 14382068 - 14382151
Alignment:
| Q |
247 |
agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtgtatagaaaccttcaagaaccatgtctg |
330 |
Q |
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| T |
14382068 |
agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtggatagaaactttcaagaaccatgtctg |
14382151 |
T |
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