View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5618_low_3 (Length: 403)
Name: NF5618_low_3
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 18938793 - 18938402
Alignment:
| Q |
1 |
acctttgatccttgaaaattgagacgtctacattacatttaaccccaccaaaggctgattttcttcatcgaatggtgttgctgctgctatgtcgttctat |
100 |
Q |
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| T |
18938793 |
acctttgatccttgaaaattgagacgtataaattacatttaaccccaccaaaggctggttttcttcatcaaatggtgttgctgctgctatgccgttctat |
18938694 |
T |
|
| Q |
101 |
tcatgtgccactgatcaaacttgattcattctccatttgtcgttgctttgcacgtacatgttgccattgatataaagattcacgcgccaacccaattgat |
200 |
Q |
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| T |
18938693 |
tcatgtgccactgatcaaacttgattcattctccatttgtcgttgctttgcgcgtacatgttgccattgatataaagattcacgcgccaacccaattgat |
18938594 |
T |
|
| Q |
201 |
attgcaggtcgtgtttccgcatcatcccatagtctatcatttcttcgctttcaaatacaccacatggtcatagcaaacataggtaagctatcatgagata |
300 |
Q |
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| T |
18938593 |
attgcaggtcgtgtttccacatcatcccatagtctatcatttctacgctttcaaatacaccacatggtcatagcaaacatatgtaagctatcatgagata |
18938494 |
T |
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| Q |
301 |
gcaattcgagcagtaggaagaagagatcaataaaaccatcaactatttccaatttattcttaataaaattccacagccccgcttcgacctat |
392 |
Q |
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| T |
18938493 |
gcaattcgagcagtaggaagaagagatcaacaaaaccatcaactatttccaatttatccttaataaaattccacagccccgcttcgacctat |
18938402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 385
Target Start/End: Original strand, 27914197 - 27914335
Alignment:
| Q |
247 |
gctttcaaatacaccacatggtcatagcaaacataggtaagctatcatgagatagcaattcgagcagtaggaagaagagatcaataaaaccatcaactat |
346 |
Q |
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|||| ||||| ||||| ||||||||| ||||||| ||| | ||||||| || | ||||| || || | |||| || ||||| ||||||||||||||| |
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| T |
27914197 |
gcttccaaatgcaccagatggtcataacaaacatgtgtaggttatcatgggacaacaatttgatcaattggaaaaaaagatcggcaaaaccatcaactat |
27914296 |
T |
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| Q |
347 |
ttccaatttattcttaataaaattccacagccccgcttc |
385 |
Q |
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||||||||||| | |||||||||||||| | |||||| |
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| T |
27914297 |
ttccaatttatcatggataaaattccacagtctcgcttc |
27914335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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