View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5618_low_7 (Length: 247)
Name: NF5618_low_7
Description: NF5618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5618_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 499713 - 499513
Alignment:
| Q |
16 |
atgggggaatggggctgtccatttccttgaacaagtttcgttgtcgctattctacgccttagagggcgcatagatcccttaattatatcttgatcaaaat |
115 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
499713 |
atgggggaatggggctgtgcatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaat |
499614 |
T |
|
| Q |
116 |
ctgcttcgcgtaaaaaatttagtagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaagattcaaaatcagtga |
215 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
499613 |
ctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtga |
499514 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
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| |
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|
| T |
499513 |
a |
499513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 6924461 - 6924261
Alignment:
| Q |
16 |
atgggggaatggggctgtccatttccttgaacaagtttcgttgtcgctattctacgccttagagggcgcatagatcccttaattatatcttgatcaaaat |
115 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6924461 |
atgggggaatggggctgtgcatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaat |
6924362 |
T |
|
| Q |
116 |
ctgcttcgcgtaaaaaatttagtagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaagattcaaaatcagtga |
215 |
Q |
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| T |
6924361 |
ctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaagtccacttcaagaatagcgtcattgtcatttctaggaccaatattcaaagtcagtga |
6924262 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
|
| |
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| T |
6924261 |
a |
6924261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 30831884 - 30831685
Alignment:
| Q |
17 |
tgggggaatggggctgtccatttccttgaacaagtttcgttgtcgctattctacgccttagagggcgcatagatcccttaattatatcttgatcaaaatc |
116 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||| |
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| T |
30831884 |
tgggggaatgggcctgtccagttccttgaacaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcggtcataatc |
30831785 |
T |
|
| Q |
117 |
tgcttcgcgtaaaaaatttagtagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaagattcaaaatcagtgaa |
216 |
Q |
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|| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
30831784 |
tgattcacgtaaaaaatttagtagaaaaaattcgtgattcaggtccagttcaggaatagcatcattgtcatttctaggaccaagattcaaagtcagtgaa |
30831685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 47460370 - 47460487
Alignment:
| Q |
98 |
ttatatcttgatcaaaatctgcttcgcgtaaaaaatttagtagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggacc |
197 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460370 |
ttatatctcgatcaaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggacc |
47460469 |
T |
|
| Q |
198 |
aagattcaaaatcagtga |
215 |
Q |
| |
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|| ||||||| ||||||| |
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| T |
47460470 |
aatattcaaagtcagtga |
47460487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 2912825 - 2912956
Alignment:
| Q |
17 |
tgggggaatggggctgtccatttccttgaacaagtttcgttgtcgctattct-acgccttagagggcgcatagatcccttaattatatcttgatcaaaat |
115 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||| |||| |||| | ||| ||||||||| ||||||||||||||||||||||| | ||| ||| |
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| T |
2912825 |
tgggggaatgggaatgtccagttccttgaacaagtttcaaagtcgttatttttacgacttagagggtgcatagatcccttaattatatctcggtcataat |
2912924 |
T |
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| Q |
116 |
ctgcttcgcgtaaaaaatttagtagaaaaaat |
147 |
Q |
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||| ||||||||||||||||| | |||||||| |
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| T |
2912925 |
ctggttcgcgtaaaaaatttaattgaaaaaat |
2912956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 28384101 - 28384173
Alignment:
| Q |
143 |
aaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaagattcaaaatcagtgaa |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
28384101 |
aaaattcgtgatttaggtccagttcaggaatagcgtcattgtca-ttctaggaccaagattcaaagttagtgaa |
28384173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 11299426 - 11299504
Alignment:
| Q |
17 |
tgggggaatggggctgtccatttccttgaacaagtttcgttgtcgctattctacgccttagagggcgcatagatccctt |
95 |
Q |
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||||||||||| |||||| | ||||||||||||||| |||| |||| |||||||||||||| ||||||||||||| |
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| T |
11299426 |
tgggggaatggacatgtccagctgcttgaacaagtttcgaagtcgttattttacgccttagagggtgcatagatccctt |
11299504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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