View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619-Insertion-1 (Length: 301)
Name: NF5619-Insertion-1
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 26723451 - 26723158
Alignment:
| Q |
8 |
cttcattcatccaaaaccttctcaaatcccgacacagaacaaatcaaacgtgctttcgacttcgccggaattcacataacaaagttcgaacaccagcctt |
107 |
Q |
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| T |
26723451 |
cttcattcatccaaaaccttctcaaatcccgacatagaacaaatcaaacgtgctttcgacttcgccggaattcacataacaaagttcgaacaccagcctt |
26723352 |
T |
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| Q |
108 |
cgtaaaggtaaactgtaccaaaatgggcaagtttgatgtggatttaaagatctttcaaaactgcagttttaaggcaatatgtttagaaatcatatctgtg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26723351 |
cgtaaaggtaaactgtaccaaaatgggcaagtttgatgtggatttaaagatctttcaaaactgcagttttaaggcaatatgtttagaaatcatatctgtg |
26723252 |
T |
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| Q |
208 |
ttttggctgcagctgttcggaatgggtgtggtgtacaaatagcccaattgtgcggcagtttttagcgttcaattggttgggttcgtttactggt |
301 |
Q |
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| T |
26723251 |
ttttgcttgcagctgttcggaatgggtgtggtgtacaaatagcccaactgtgcggcagtttttagcgttcagttggttgggttcgtttactggt |
26723158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 14512175 - 14512057
Alignment:
| Q |
183 |
aatatgtttagaaatcatatctgtgttttggctgcagctgttcggaatgggtgtggtgtacaaatagcccaattgtgcggcagtttttagcgttcaattg |
282 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
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| T |
14512175 |
aatatgtttagaaatcatattcgtgttttggttgcagctgttcggaattggtgtggtgtacaaacagcccaactgtgcggcagtttttagcgttcagttg |
14512076 |
T |
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| Q |
283 |
gttgggttcgtttactggt |
301 |
Q |
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|||||||| |||||||||| |
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| T |
14512075 |
gttgggtttgtttactggt |
14512057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 183 - 301
Target Start/End: Original strand, 3597867 - 3597985
Alignment:
| Q |
183 |
aatatgtttagaaatcatatctgtgttttggctgcagctgttcggaatgggtgtggtgtacaaatagcccaattgtgcggcagtttttagcgttcaattg |
282 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||| ||| |
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| T |
3597867 |
aatatgtttagaaatcatatccgtgttttggttgcagctgttcggaattggtgtggtgtacaaacagcccaactgtgcggcagtttttagctttcagttg |
3597966 |
T |
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| Q |
283 |
gttgggttcgtttactggt |
301 |
Q |
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||||||| |||||||||| |
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| T |
3597967 |
attgggtttgtttactggt |
3597985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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