View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_high_7 (Length: 316)
Name: NF5619_high_7
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 35285623 - 35285893
Alignment:
| Q |
24 |
aaaaaagaaagaacaaattaagcctagtgttctatgtggaccatttactctaatctggttatatatcagcagatcatgaaaacacaaggtaagagttatt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35285623 |
aaaaaagaaagaacaaattaagcctagtgttctatgtggaccatttactctaatctggatatatatcagcagatcatgaaaacacaaggtaagagttatt |
35285722 |
T |
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| Q |
124 |
cactcttttctgtttgtctctacagaatccttatgttccaagcccattctcacattttatagtagtacttatagagactaaactagttacaatgaagcat |
223 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
35285723 |
cactcttt-ctgtttgtctctacagaatccttatgttccaagcccattctcacattttatagtagtacctatagagactaaactggttacaatgaagcat |
35285821 |
T |
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| Q |
224 |
ggctgcaggggagaatttacaccaaagaatagagacatcaactagaacttcatttccatatgttcaccacag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35285822 |
ggctgcaggggagaatttacaccaaagaatagagacatcaactagaacttcatttccatatgttcaccacag |
35285893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 35240337 - 35240396
Alignment:
| Q |
236 |
gaatttacaccaaagaatagagacatcaactagaacttcatttccatatgttcaccacag |
295 |
Q |
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| T |
35240337 |
gaatttacaccaaataacagagacattaactagaacttcatttccatatcttcaccacag |
35240396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 35252589 - 35252648
Alignment:
| Q |
236 |
gaatttacaccaaagaatagagacatcaactagaacttcatttccatatgttcaccacag |
295 |
Q |
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| T |
35252589 |
gaatttacaccaaagaacagagacatttactagaacttcatttccatatcttcaccacag |
35252648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 35288301 - 35288401
Alignment:
| Q |
69 |
tactctaatctggttatatatcagcagatcatgaaaacacaaggtaagagttattcactcttttctgtttgtctctacagaatccttatgttccaagccc |
168 |
Q |
| |
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||||||||| |||| || |||||| |||||||||||| ||||| ||| |||||||| ||||||| |||||| ||||| || ||||||| |||||||||| |
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| T |
35288301 |
tactctaatttggtcatgtatcaggagatcatgaaaaaacaagataatagttattcgctctttt-tgtttgcctctagaggatccttagcttccaagccc |
35288399 |
T |
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| Q |
169 |
at |
170 |
Q |
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|| |
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| T |
35288400 |
at |
35288401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 35245801 - 35245857
Alignment:
| Q |
236 |
gaatttacaccaaagaatagagacatcaactagaacttcatttccatatgttcacca |
292 |
Q |
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|||||||||||| || | |||||||| |||||||| |||||||||||| ||||||| |
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| T |
35245801 |
gaatttacaccatagcacagagacattaactagaatttcatttccatagcttcacca |
35245857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 35276954 - 35276982
Alignment:
| Q |
267 |
agaacttcatttccatatgttcaccacag |
295 |
Q |
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| T |
35276954 |
agaacttcatttccatatgttcaccacag |
35276982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 27410285 - 27410387
Alignment:
| Q |
53 |
ttctatgtggaccatttactctaatctggttatatatcagcagatcatgaaaacacaaggtaagagttattcactcttttctgtttgtctctacagaatc |
152 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |
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| T |
27410285 |
ttctatgtggaccatttactttaatttggttatatatcagcagatcatgaaaacacaaggtaagagttattcactc-tttctttttgtctctacaggatc |
27410383 |
T |
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| Q |
153 |
ctta |
156 |
Q |
| |
|
|||| |
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|
| T |
27410384 |
ctta |
27410387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 27410400 - 27410474
Alignment:
| Q |
228 |
gcaggggagaatttacaccaaagaatagagacatcaactaga-ac------ttcatttccatatgttcaccacag |
295 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
27410400 |
gcaggggagaatgtacaccaaagaatagagacatcaactagacacagattattcatttccatatgttcaccacag |
27410474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 37964193 - 37964122
Alignment:
| Q |
231 |
ggggagaatttacaccaaagaatagagacatcaactaga-ac------ttcatttccatatgttcaccacag |
295 |
Q |
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||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
37964193 |
ggggagaatgtacaccgaagaatagagacatcaactagagacagattattcatttccatatgttcaccacag |
37964122 |
T |
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