View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5619_high_8 (Length: 310)

Name: NF5619_high_8
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5619_high_8
NF5619_high_8
[»] chr5 (1 HSPs)
chr5 (19-305)||(38068035-38068327)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 38068327 - 38068035
Alignment:
Q  19 gtctgaacttgatcttagtcaaaacaagcttgaaggtactttattgccgtgttttccgtgcaaattgtagtcatattttgtatttctt------tactta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||    
T  38068327 gtctgaacttgatcttagtcaaaacaagcttgaaggtactttattgccgtgttttccgtgcaaattgtagtcatattttgtatttcttgaacattactta 38068228  T
Q  113 ttcatcaattttagtcaggatttaatttgtattcatcgacagtgcaaagcttttttacactgtcagttaatcataaaccattgaatcattaaattatttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38068227 ttcatcaattttagtcaggatttaatttgtattcatcgacagtgcaaagcttttttacactgtcagttaatcataaaccattcaatcattaaattatttt 38068128  T
Q  213 acgatcatcatatctaacttaaaagtcttatacatgatcgtttatgattatttgattgtaaaaaattcaatgacagtgtatgcctatgcttct 305  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38068127 actatcatcatatctaacttaatagtcttatacatgatcgtttatgattatttgattgtaaaaaattcaatgacagtgtatgcgtatgattct 38068035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University