View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_low_1 (Length: 830)
Name: NF5619_low_1
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Original strand, 31203670 - 31204202
Alignment:
| Q |
17 |
aacacattgtaaggagtcctatcacagtcaggcgcaaataaacaatctatattttggttctgtcaggatataacagtgtcgatgcacatgccaatgtatt |
116 |
Q |
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| T |
31203670 |
aacacattgtaaggagtcctatcacagtcaggcgcaaataaacaatctatattttggttctgtcaggatataacagtgtcgatgcacatgccaatgtatt |
31203769 |
T |
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| Q |
117 |
tgagtgggtattaagatttctggttatcaataggttgtgtgccttttgttattttatccttcattagttgtctatgtattgtaatgtagcgtgttgtgta |
216 |
Q |
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| T |
31203770 |
tgagtgagtattaagatttcttgttatcaataggttgtgtgccttttgttattttatccttcattagttgtctatgtattgtaatgtagtgtgttgtgta |
31203869 |
T |
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| Q |
217 |
atcgttatcaataagtggcagtgcaacatctttatctcttcattatatgaagcagcggatatgcttgtagctttaattttctaatcccatagtggttctt |
316 |
Q |
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| T |
31203870 |
atcgttatcaataagtggcagtgcaacatctttatctcttcat-atatgaagcagcggatatgcttgtagctttaattttctaatcccatagtggttctt |
31203968 |
T |
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| Q |
317 |
ttaaacactttcaaaatgattcaacaacactcacatttctaaatccctcacgaaaggaaatatcatccagcaaatccttaacttatccaggaaatataat |
416 |
Q |
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| T |
31203969 |
ttaaacactttcaaaatgattcaacaacactcacatttctaaatccctcacgaaaggaaatatcatccagcaaatccttaacttatccaggaaatataat |
31204068 |
T |
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| Q |
417 |
tttgctcacttacaagtcacgttttaatttttctacaatttatatcactatatgcctataactatatcttctatacaaatcaaaggttgtagaactaaca |
516 |
Q |
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| T |
31204069 |
tttgctcacttacaagtcacgttttaatttttctacaatttatatcactatatgcctataactatatcttctatacaaatcaaaggttgtagaactaaca |
31204168 |
T |
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| Q |
517 |
tatttcaccttacaacaaaaacagtagaaaaacc |
550 |
Q |
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| T |
31204169 |
tatttcaccttacaacaaaaacagttgaaaaacc |
31204202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 600 - 763
Target Start/End: Original strand, 31204253 - 31204418
Alignment:
| Q |
600 |
agttagtcaggctattagagactaatatggcagcttcgttcaagaaaaattgataacacgacttgacagaaaaaccacatgcaatgtccggcatccacac |
699 |
Q |
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| T |
31204253 |
agttagtcaggctattagagactgatatggcagcttcgttcaagaacaattgataacacgacttgacagaaaaaccacatgcaatgtccggcatccacac |
31204352 |
T |
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| Q |
700 |
ccaaaaattgtgtacgtcatgcacgcac--gagaaacaccgctatgagttcctcaaattctgtcaa |
763 |
Q |
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| T |
31204353 |
ccaacaattgtgtacgtcatgcacgcaccggagaaacaccgctatgagttcctcaaattctatcaa |
31204418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 760 - 815
Target Start/End: Original strand, 31204445 - 31204500
Alignment:
| Q |
760 |
tcaaattccacttccaaactgtttctgtccagcccaccggattcttatgccattgc |
815 |
Q |
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| T |
31204445 |
tcaaattccacttccaaactgtttctgtccagcccaccggattcttatgccattgc |
31204500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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