View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_low_13 (Length: 245)
Name: NF5619_low_13
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 14323507 - 14323269
Alignment:
| Q |
4 |
ttttagttttcaggtcaatatctatatttctttatggatcttaagttgtcttatagattgttcaaaaaatagttgttcaaataacatatctcgtttaaat |
103 |
Q |
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| T |
14323507 |
ttttatttttcaggtcaatacctatatttctttgtg-atcttaagttgtcctataagttgtccaaaaaatagttgttcaaataacatatctcatttaaat |
14323409 |
T |
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| Q |
104 |
agattaacgaataaatatactaatgagactatgttgcaacttttttgtctttaaataacctaatcgatcgtacttgacttttgagaaagtgaaactca-a |
202 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
14323408 |
agattaacgaataaatatactaatgagcctatgttgcaacttttttgtctttaaataacctaatggatcatacttgacttttgagaaagtgaaactcaga |
14323309 |
T |
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| Q |
203 |
cataggttttaaattctgtgaaattcttccgcacctttgc |
242 |
Q |
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| T |
14323308 |
cataggttttaaattctgtgaaattcttccgcacctttgc |
14323269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 1248389 - 1248431
Alignment:
| Q |
49 |
ttgtcttatagattgttcaaaaaatagttgttcaaataacata |
91 |
Q |
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| T |
1248389 |
ttgtctcataaattgtacaaaaaatagttgttcaaataacata |
1248431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 13961332 - 13961278
Alignment:
| Q |
41 |
atcttaagttgtcttatagattgttcaaaaaatagttgttcaaataacatatctc |
95 |
Q |
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| T |
13961332 |
atctttagttgtattataagttgtttaaaaaatagttgttcaaataatatatctc |
13961278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 45006918 - 45006946
Alignment:
| Q |
67 |
aaaaaatagttgttcaaataacatatctc |
95 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
45006918 |
aaaaaatagttgttcaaataacatatctc |
45006946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 26767580 - 26767612
Alignment:
| Q |
3 |
attttagttttcaggtcaatatctatatttctt |
35 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
26767580 |
attttagttttcatgtcaatatctatatttctt |
26767612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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