View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5619_low_15 (Length: 229)
Name: NF5619_low_15
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_15 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 4549969 - 4549801
Alignment:
| Q |
61 |
caacgggtctaatattcatgtatttcacaacttaataagtaaaaattcaaactaataaaagtttcttaatatagatcgactagcatcaaagaaaattcct |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4549969 |
caacgggtctaatattcatgtatttcacaacttaataagtaaaaattcaaactaataaaagtttcttaatatagatcgactagcatcaaagaaaattcct |
4549870 |
T |
|
| Q |
161 |
atatctcatcctggccatactcaaggagaggatacatataatgcagacctcccaataatccctttaatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4549869 |
atatctcatcctggccatactcaaggagaggatacatataatgcagacctcccaataatccctttaatt |
4549801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 3093501 - 3093641
Alignment:
| Q |
93 |
taataagtaaaaattcaaactaataaaagtt-----tcttaatatagatcgactagcatcaaagaaaattcctatatctcatcctggccatactcaagga |
187 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||||||||||| || || ||||||||| |||||| |||||||||| |||||||| ||||||| |
|
|
| T |
3093501 |
taataagacaaaattcaaactaataaaagttatttttattaatatagatggaataccatcaaagacaattcccatatctcatcatggccatattcaagga |
3093600 |
T |
|
| Q |
188 |
gaggatacatataatgcagacctcccaataatccctttaat |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093601 |
gaggatacatataatgcagacctcccaataatccctttaat |
3093641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 3079016 - 3079155
Alignment:
| Q |
93 |
taataagtaaaaattcaaactaataaaagtttctt----aatatagatcgactagcatcaaagaaaattcctatatctcatcctggccatactcaaggag |
188 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| |||| ||||| ||||||||| || |||||||||||| | |||||||| |||||||| |
|
|
| T |
3079016 |
taataagataaaattcaaactaataaaagttttattttaaatacagatggactaccatcaaagacaactcctatatctcaacatggccatattcaaggag |
3079115 |
T |
|
| Q |
189 |
aggatacatataatgcagacctcccaataatccctttaat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3079116 |
aggatacatataatgcagacctcccaataatccctttaat |
3079155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University