View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5619_low_2 (Length: 745)

Name: NF5619_low_2
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5619_low_2
NF5619_low_2
[»] chr4 (3 HSPs)
chr4 (445-713)||(37876181-37876454)
chr4 (29-121)||(37875717-37875811)
chr4 (334-415)||(37876099-37876180)
[»] chr2 (3 HSPs)
chr2 (445-713)||(23895227-23895500)
chr2 (334-415)||(23895501-23895582)
chr2 (29-97)||(23895870-23895938)
[»] chr8 (10 HSPs)
chr8 (475-650)||(18106881-18107053)
chr8 (334-449)||(18106565-18106679)
chr8 (185-329)||(18082374-18082509)
chr8 (24-97)||(18082644-18082717)
chr8 (17-82)||(18097047-18097112)
chr8 (652-713)||(18138725-18138786)
chr8 (652-713)||(18097565-18097626)
chr8 (280-329)||(18139411-18139460)
chr8 (277-329)||(18096791-18096843)
chr8 (17-82)||(18139141-18139204)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 445 - 713
Target Start/End: Original strand, 37876181 - 37876454
Alignment:
Q  445 tagttgatgcacaatagacttgnnnnnnnnaatgttagatgaactcaattgtag---gtttcattcca--gtcttgtgtgttcctttgcaaaccggcatt 539  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||   ||||||||| |  |||| |||||||||||||||||||||||||    
T  37876181 tagttgatgcacaatagacttgttttttt-aatgttagatgaactcaattgtagtaggtttcattctatggtct-gtgtgttcctttgcaaaccggcatt 37876278  T
Q  540 ataccttctccatgtggggggtcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcct 639  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  37876279 ataccttctccatgtgggg-gtcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagggaagttttatgaatgcct 37876377  T
Q  640 gatttta---tattattattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 713  Q
    |||||||   |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37876378 gattttatattattattattatagattttgagacatgaaatgtctaaaagactccaatggtaaattatagttttgat 37876454  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 37875811 - 37875717
Alignment:
Q  29 caaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctgc--cacatacagtttctaaacaacttcataa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  37875811 caaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctgccacacatacagtttctaaataacttcataa 37875717  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 37876099 - 37876180
Alignment:
Q  334 tagttagttctatcttttgttgtagacgtccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 415  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876099 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 37876180  T

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Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 445 - 713
Target Start/End: Complemental strand, 23895500 - 23895227
Alignment:
Q  445 tagttgatgcacaatagacttgnnnnnnnnaatgttagatgaactcaattgtag---gtttcattcca--gtcttgtgtgttcctttgcaaaccggcatt 539  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||   ||||||||| |  |||| |||||||||||||||||||||||||    
T  23895500 tagttgatgcacaatagacttgttttttt-aatgttagatgaactcaattgtagtaggtttcattctatggtct-gtgtgttcctttgcaaaccggcatt 23895403  T
Q  540 ataccttctccatgtggggggtcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcct 639  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  23895402 ataccttctccatgtggggg-tcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagggaagttttatgaatgcct 23895304  T
Q  640 gattttatattatta---ttatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 713  Q
    |||||||||||||||   |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  23895303 gattttatattattattattatagattttgagacatgaaatgtctaaaagactccaatggtaaattatagttttgat 23895227  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 23895582 - 23895501
Alignment:
Q  334 tagttagttctatcttttgttgtagacgtccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 415  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895582 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 23895501  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 23895870 - 23895938
Alignment:
Q  29 caaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctgccaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895870 caaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctgccaca 23895938  T

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Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 475 - 650
Target Start/End: Original strand, 18106881 - 18107053
Alignment:
Q  475 aatgttagatgaactcaattgtaggtttcattccagtcttgtgtgttcctttgcaaaccggcattataccttctccatgtggggggtcttcatattgcat 574  Q
    |||||||||||||||||||| ||||||||||| | |||| ||||||||||||||| |||||||||||||||| || ||||||| | ||||||||||||      
T  18106881 aatgttagatgaactcaattataggtttcatttcggtct-gtgtgttcctttgcacaccggcattataccttttctatgtgggag-tcttcatattgctc 18106978  T
Q  575 agtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcctgattttatatt 650  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| || | |||||| ||| |||||||||||||    
T  18106979 agtttaactattaagctttatgatataggtgttatgcgcataaaagggaagctttatg-atgtctgattttatatt 18107053  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 334 - 449
Target Start/End: Original strand, 18106565 - 18106679
Alignment:
Q  334 tagttagttctatcttttgttgtagacgtccttgatattgtttagtagtgttattattttggttatacacatatttgactgcatgatttctacaaaattg 433  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  18106565 tagttagttctatcttttgtcgtagacggccttgatattgtt-agtagtattattattttggcgatacacatatttgactgcattatttctacaaaattg 18106663  T
Q  434 aagatttatcttagtt 449  Q
    ||| ||||||||||||    
T  18106664 aagctttatcttagtt 18106679  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 185 - 329
Target Start/End: Complemental strand, 18082509 - 18082374
Alignment:
Q  185 attaccatgtgcgaacaaactaactctccattaactccaatttcctgaactctttgggtacttaaatcaatccagttccagcctatatcataagaatctt 284  Q
    ||||||||||||||||||| | ||||||| |||||||||||| ||| |||||||||||||||||||||||       ||||||||  ||   ||||||||    
T  18082509 attaccatgtgcgaacaaaatgactctccgttaactccaattacctcaactctttgggtacttaaatcaa------accagcctagctc---agaatctt 18082419  T
Q  285 cttccctgaagaatacacggttcttgttccctactgtgacaggac 329  Q
    ||| ||||||||||| |||||||||||||||||||| || |||||    
T  18082418 ctttcctgaagaatatacggttcttgttccctactgagataggac 18082374  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 18082717 - 18082644
Alignment:
Q  24 aatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctgccaca 97  Q
    ||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||    
T  18082717 aatgtcaaaaaacaaagtcacatagtgttatggagtatagaactctggaattagacacatgttcatctgccaca 18082644  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 18097112 - 18097047
Alignment:
Q  17 acaaatgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcaca 82  Q
    |||||| ||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  18097112 acaaataaatgtcaaataacaaagtgacatagtgttatggagtatagaactctggaattagtcaca 18097047  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 652 - 713
Target Start/End: Complemental strand, 18138786 - 18138725
Alignment:
Q  652 ttattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 713  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||    
T  18138786 ttattatagattttgagacatggaatctctaaaagactccaatgctaaattgtagttttgat 18138725  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 713
Target Start/End: Original strand, 18097565 - 18097626
Alignment:
Q  652 ttattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 713  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||||||||||    
T  18097565 ttattatagattttgagacatggaatgtctaatagacttcaacgctaaattatagttttgat 18097626  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 18139411 - 18139460
Alignment:
Q  280 atcttcttccctgaagaatacacggttcttgttccctactgtgacaggac 329  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||    
T  18139411 atcttcttccctgaagaatatacggttcttgttccctactgagataggac 18139460  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 18096843 - 18096791
Alignment:
Q  277 agaatcttcttccctgaagaatacacggttcttgttccctactgtgacaggac 329  Q
    |||||||||||||||||| |||| |||||||||||||||||||| || |||||    
T  18096843 agaatcttcttccctgaaaaatatacggttcttgttccctactgagataggac 18096791  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 18139141 - 18139204
Alignment:
Q  17 acaaatgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcaca 82  Q
    |||||| ||||||||||||||| || |||  ||||||||||||||| |||||||||| ||||||||    
T  18139141 acaaataaatgtcaaataacaaagtgaca--gtgttatggagtatagaactctggaattagtcaca 18139204  T

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