View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_low_3 (Length: 532)
Name: NF5619_low_3
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 6 - 516
Target Start/End: Original strand, 48922506 - 48923016
Alignment:
| Q |
6 |
agtgagatgaattcgatcctttcatgaagcgtcatacaaactacaaagcaggagctttgtttcatgtaacaaaaatcttgagatagaatcctacaagttt |
105 |
Q |
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| T |
48922506 |
agtgaggtgaattcgatccttccatgaagcgtcatacaaactacaaagcaggagctttgtttcatgtaacaaaaatcttgagatagaatcctacaagttt |
48922605 |
T |
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| Q |
106 |
atcagagttgtataaggaaagagataataaatgcaaaagggatttctagataagcatttcatatataatggacactaattaacgaagtttacattgataa |
205 |
Q |
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| T |
48922606 |
atcagagttgtaaaaggaaagagataataaatgcagaagggatttctagataagcatttcatatataatggacactaattaacgaagtttacattgataa |
48922705 |
T |
|
| Q |
206 |
tgattagattattggtgaacaaatatatacatgttcaagtgctaaactaagatgagttaacaacatgtgctgcagttaatctgcaacttcttattttttg |
305 |
Q |
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| T |
48922706 |
tgattagattattggtgaacaaatatatacatgttcaagtgctaaactaagatgagttaacaacatgtgctgcagttaatctgcaacttcttattttttg |
48922805 |
T |
|
| Q |
306 |
tatatgctgcataaagagcaacagataaatagaagtataaaattagtaatgttatgtcatatttcttacttcaatttttctgtatcagtttgatcaataa |
405 |
Q |
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| T |
48922806 |
tatatgctgcataaagagcaacagataaatagaagtataaaattagtaatgttatgtcatatttcttacttcaatttttctgtatcagtttgatcaataa |
48922905 |
T |
|
| Q |
406 |
aaatagttttggtgctcgaagataactgaccattactttttgccactaatatatgccacatgaccaaaataaatgatataaattaaatccatctttcacc |
505 |
Q |
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| T |
48922906 |
aaatagttttggtgctcgaagataactgaccattactttttgccactaatatatgccacatgaccaaaataaatgatataaattaaatccatctttcacc |
48923005 |
T |
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| Q |
506 |
aaaaaacaaac |
516 |
Q |
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| T |
48923006 |
aaaaaacaaac |
48923016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 48876422 - 48876383
Alignment:
| Q |
226 |
aaatatatacatgttcaagtgctaaactaagatgagttaa |
265 |
Q |
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| T |
48876422 |
aaatacatgcatgttcaagtgctaaactaagatgagttaa |
48876383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Complemental strand, 48875995 - 48875959
Alignment:
| Q |
442 |
tttttgccactaatatatgccacatgaccaaaataaa |
478 |
Q |
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| T |
48875995 |
tttttgccactaatgtaggccacatgaccaaaataaa |
48875959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Original strand, 48923085 - 48923113
Alignment:
| Q |
488 |
ttaaatccatctttcaccaaaaaacaaac |
516 |
Q |
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| T |
48923085 |
ttaaatccatctttcaccaaaaaacaaac |
48923113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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