View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_low_4 (Length: 493)
Name: NF5619_low_4
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 43939405 - 43939884
Alignment:
| Q |
1 |
gccatcagaatcatagaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagac |
100 |
Q |
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| T |
43939405 |
gccatcagaatcattgaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagac |
43939504 |
T |
|
| Q |
101 |
gcggtaactctaagacttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaa |
200 |
Q |
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| T |
43939505 |
gcggtaactctgagacttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaa |
43939604 |
T |
|
| Q |
201 |
cgaacaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagacttttgttaatacc |
300 |
Q |
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| T |
43939605 |
cgatcaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaatacc |
43939704 |
T |
|
| Q |
301 |
gggcttctaacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcat |
400 |
Q |
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| T |
43939705 |
gggcttctaacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcat |
43939804 |
T |
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| Q |
401 |
ctttaaactcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggt |
480 |
Q |
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| T |
43939805 |
ctttaaactcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggt |
43939884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 43927847 - 43927944
Alignment:
| Q |
352 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccc |
449 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||| |||||||| |
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| T |
43927847 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttccc |
43927944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 445
Target Start/End: Complemental strand, 15608285 - 15608185
Alignment:
| Q |
349 |
aaagcaatctccataccagaattaccagaaccaacaacaagaacatg----ttcatctttaaactcttttccatttttgtacctagttgaatgaattact |
444 |
Q |
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| T |
15608285 |
aaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaatgaatcact |
15608186 |
T |
|
| Q |
445 |
t |
445 |
Q |
| |
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| |
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|
| T |
15608185 |
t |
15608185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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