View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_low_5 (Length: 482)
Name: NF5619_low_5
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 91 - 464
Target Start/End: Complemental strand, 356986 - 356612
Alignment:
| Q |
91 |
aactaatttagttggtgcaatagttaacatatttatcacctgtcggtcaaaaggaggaaagacagatgtaatnnnnnnnnnn-tccatgctaatgctata |
189 |
Q |
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| T |
356986 |
aactaatttagttggtgcaatagttaacatatttatcacctgtcggtcaaaaggaggaaagacagatgtaataaaaaaaaaaatccatgctaatgctata |
356887 |
T |
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| Q |
190 |
taaaggacaaccatatactacactaaatcatatcaaacaacatcaataatttacaatagccatgcttagttatacatcaataatttatgcactcttcttc |
289 |
Q |
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| T |
356886 |
taaaggacaaccatatactacactaaatcatatcaaacaacatcaataatttacaatagccatgcttagttatacatcaataatttatgcactcttcttc |
356787 |
T |
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| Q |
290 |
ttcttcctatgcatcgtcttccaaattcatcgttggagacgttgcaaatacccaattcttacagattatccaatttttggcatgataataccattattgt |
389 |
Q |
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| T |
356786 |
ttcttcctatgcatcgtcttccaaattcatcgttggagacgttgcaaatacccaattcttacagattatccaatttttggcatgataataccattattgt |
356687 |
T |
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| Q |
390 |
ggaacttgcctcgagttcatgatttcataactcagctgttgaaacaacaacataggaacacatgtgagttcatgg |
464 |
Q |
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| T |
356686 |
ggaacttgcctcgagttcatgatttcataactcagctgttgaaaaaacaacataggaacacatgtgagttcatgg |
356612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 288 - 464
Target Start/End: Complemental strand, 348130 - 347953
Alignment:
| Q |
288 |
tcttcttcctatgcatcgtcttccaaattcatcgttggagacgttgcaaatacccaattcttaca-gattatccaatttttggcatgataataccattat |
386 |
Q |
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||||||| |||||||| ||||||||||||||||| | ||| ||||||||||||||||| ||| | ||||||||| |||| |||||| || ||||| | | |
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| T |
348130 |
tcttcttgatatgcatcttcttccaaattcatcgtcgaagaagttgcaaatacccaatttttaaaagattatccatttttgggcatgctactaccactct |
348031 |
T |
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| Q |
387 |
tgtggaacttgcctcgagttcatgatttcataactcagctgttgaaacaacaacataggaacacatgtgagttcatgg |
464 |
Q |
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| T |
348030 |
tttggaacttgtggcaagttcatgatttagtaactgaggcattgaaacaacaacataggagcacatgtgagttcatgg |
347953 |
T |
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