View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5619_low_6 (Length: 440)

Name: NF5619_low_6
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5619_low_6
NF5619_low_6
[»] chr6 (7 HSPs)
chr6 (301-425)||(25524764-25524888)
chr6 (301-425)||(26047219-26047341)
chr6 (301-425)||(26049244-26049366)
chr6 (301-425)||(26065528-26065650)
chr6 (301-425)||(26070413-26070535)
chr6 (301-425)||(26085497-26085619)
chr6 (301-424)||(25516543-25516665)
[»] chr4 (3 HSPs)
chr4 (226-272)||(23499443-23499489)
chr4 (211-267)||(29391162-29391218)
chr4 (211-272)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (211-272)||(19267374-19267435)
chr7 (220-272)||(30969761-30969813)
chr7 (211-272)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (226-272)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (211-274)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (220-272)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 25524764 - 25524888
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||| ||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcgcataacaat 25524863  T
Q  401 gcaataaaaaacgggagttggcaag 425  Q
    |||| |||| | | |||||||||||    
T  25524864 gcaacaaaacatgagagttggcaag 25524888  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 26047219 - 26047341
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26047316  T
Q  401 gcaataaaaaacgggagttggcaag 425  Q
    |||| |||| | | |||||||||||    
T  26047317 gcaacaaaacatgagagttggcaag 26047341  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 26049244 - 26049366
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26049341  T
Q  401 gcaataaaaaacgggagttggcaag 425  Q
    |||| |||| | | |||||||||||    
T  26049342 gcaacaaaacatgagagttggcaag 26049366  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 26065528 - 26065650
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26065625  T
Q  401 gcaataaaaaacgggagttggcaag 425  Q
    |||| |||| | | |||||||||||    
T  26065626 gcaacaaaacatgagagttggcaag 26065650  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 26070413 - 26070535
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26070510  T
Q  401 gcaataaaaaacgggagttggcaag 425  Q
    |||| |||| | | |||||||||||    
T  26070511 gcaacaaaacatgagagttggcaag 26070535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 26085497 - 26085619
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26085594  T
Q  401 gcaataaaaaacgggagttggcaag 425  Q
    |||| |||| | | |||||||||||    
T  26085595 gcaacaaaacatgagagttggcaag 26085619  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 301 - 424
Target Start/End: Original strand, 25516543 - 25516665
Alignment:
Q  301 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 400  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | |||||||||| || ||||     
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcgcat-acaac 25516641  T
Q  401 gcaataaaaaacgggagttggcaa 424  Q
    |||| |||| | | ||||||||||    
T  25516642 gcaacaaaacatgagagttggcaa 25516665  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  226 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  211 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 267  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  211 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  211 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  220 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  211 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  226 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  211 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 274  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  220 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 272  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

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