View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5619_low_7 (Length: 424)
Name: NF5619_low_7
Description: NF5619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5619_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 35284598 - 35284996
Alignment:
| Q |
12 |
aatgacagtgagtgagtgaactaagctggaactgtgaactttgcaaataagtaaccaacttcctaactaccttttaacagattcaactaactattgcatt |
111 |
Q |
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| T |
35284598 |
aatgacagtgagtgagtaaactaagctggaactgtgaactttgcaaataagtaaccaacttcctaactaccttttaacagattcaactaactattgcatt |
35284697 |
T |
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| Q |
112 |
ttgaattatacctcgcatgtatttaatagtgagcaagcatgcgaatgaataactctacatttaaattttgcttttctcattgagtagtgttgtgtttgtt |
211 |
Q |
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| T |
35284698 |
ttgaattatacctcgcatgtatttaatagtgagcaagcatgcgaatgaataactctacatttaaattttgcttttctcattgagtagtgttgtgtttgtt |
35284797 |
T |
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| Q |
212 |
atgattcgtgaaccggaccaaccagttcaaacggttgaaccagaacggatctttatctgatctaatctttgaaccgacataaaaatgagtgggaacnnnn |
311 |
Q |
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| T |
35284798 |
atgattcgtgaaccggaccaaccagttcaaacggttgaaccagaacggatctttatctgatctaatctttgaaccgacataaaaatgagcgggaac-aaa |
35284896 |
T |
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| Q |
312 |
nnnnnntattttcaaagctaagcaaactttataaaaaggaaaatgaaaatattaatcacatgaaggagcataagcgatttgctgactttgtatctatctc |
411 |
Q |
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| T |
35284897 |
aaaaaatattttcaaagctaaggaaactttataaaaaggaaaatgaaaatattaatcacatgaaagagcataagcgatttgctaactttgtatctatctc |
35284996 |
T |
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