View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5620-Insertion-2 (Length: 425)
Name: NF5620-Insertion-2
Description: NF5620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5620-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 425
Target Start/End: Original strand, 33642398 - 33642825
Alignment:
| Q |
5 |
acagtttgcatgcagtgtcacatgttggttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgcactcaccagatcagaacccttcga |
104 |
Q |
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| T |
33642398 |
acagtttgcatgcagtgtcacatgttggttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgcactcaccagatcagaacccttcga |
33642497 |
T |
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| Q |
105 |
aattcttgaagagcaggtgcagcttcttctgctctagttaggaaccgcagatactactcatgtagaaaatcttcagcttttatatatacatcatatggcg |
204 |
Q |
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| T |
33642498 |
aattcttgaagagcaggtgcagcttcttctgctctagttaggaaccgcagatactactcatgtagaaaatcttcagcttt--tatatacatcatatggcg |
33642595 |
T |
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| Q |
205 |
caaatgtatcaatcatcctatgttatctatcttgttcttttctccttattccctttcc---------ttagcctagtatataatcatatcgtcgtattat |
295 |
Q |
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| T |
33642596 |
caaatgtatcaatcatcctatgttatctatcttgttcttttctccttattccctttccttatatatattagcctagtatataatcatatcgtcgtattat |
33642695 |
T |
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| Q |
296 |
gtacattttagactcgatcatctatatttatccacgttagacagagcagaatattagtagattcttccaagatttgaaattaatcaatacatttttgtta |
395 |
Q |
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| T |
33642696 |
gtacattttagactcgatcatctatatttatccacgttagacagagcagaatattagtagattcttccaagatttgaaattaatcaagacatttttgtta |
33642795 |
T |
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| Q |
396 |
atccttcgaatattaattgttcttcacgct |
425 |
Q |
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| T |
33642796 |
atccttcgaatattaattgttcttcacgct |
33642825 |
T |
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Back To:
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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 26416557 - 26416674
Alignment:
| Q |
3 |
caacagtttgcatgcagtgtcacatgttggttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgca---ctcaccagatcagaaccc |
99 |
Q |
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| T |
26416557 |
caacagtttgtatgaagtgtcacatgttggtaatgctttgcaaatcatctccttcttgtcctaattgcaaattcatgcatccaccaccagatcagaaccc |
26416656 |
T |
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| Q |
100 |
ttcgaaattcttgaagag |
117 |
Q |
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| T |
26416657 |
ttccaaatttttgaagag |
26416674 |
T |
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